Challenges

DREAM6 Current challenges (2011)

Please access our new website at the EBI

DREAM5 (2010)

Important Notice

The datasets and gold standards for Challenge 1 (The Epotope-Antibody Recognition Challenge) were generously provided prior to its publication and cannot be used for external publication without explicit permission from Dr. Hans-Juergen Thiesen (hj.thiesen_AT_gmx.de). For the other datasets, please refer to the original data providers and the DREAM project in your publication.

  1. Epitope-Antibody Recognition (EAR) Challenge - Predict the binding specificity of peptide-antibody interactions.
  2. TF-DNA Motif Recognition Challenge - Predict the specificity of a Transcription Factor binding to a 35-mer probe.
  3. Systems Genetics Challenge - Predict disease phenotypes and infer Gene Networks from Systems Genetics data
  4. Network Inference Challenge -Infer simulated and in-vivo gene regulation networks.
Download DREAM5 Data - website registration required
Best Performers of the DREAM5 challenges

DREAM4 (2009)

  1. Peptide Recognition Domain (PRD) Specificity Prediction - Predict protein-protein interactions at the level of binding domains and peptides
  2. DREAM4 In Silico Network Challenge - Infer simulated gene regulation networks and predict gene expression measurements
  3. Predictive Signaling Network Modeling - Predict phosphoprotein measurements using an interpretable, predictive network
Download DREAM4 Data - website registration required

DREAM3 (2008)

  1. Signaling Cascade Identification - Infer a signaling network from flow cytometery data
  2. Signaling Response Prediction - Predict missing protein concentrations from a large corpus of measurements
  3. Gene Expression Prediction - Predict missing gene expression measurements
  4. DREAM3 In Silico Network Challenge - Infer simulated gene regulation networks
Download DREAM3 Data - website registration required

DREAM2 (2007)

  1. BCL6 Transcriptional Target Prediction - Predict the genes that a transcription factor binds to
  2. Protein-Protein Interaction Network Inference - Predict a PPI network of 47 proteins
  3. Synthetic Five-Gene Network Inference - Infer a gene regulation network from qPCR and microarray measurements
  4. DREAM2 In Silico Network Challenge - Infer various network topologies from simulated "measurements"
  5. Genome-Scale Network Inference - Reconstruct a genome scale regulatory network from a large collection of microarrays
Download DREAM2 Data - website registration required

Retrieved from "http://wiki.c2b2.columbia.edu/dream/index.php/Challenges"

This page has been accessed 52,346 times. This page was last modified 18:52, 27 February 2013.

x
Find
Browse
The DREAM Project
Community portal
Current events
Recent changes
Random page
Help
Donations
Edit
Edit this page
Editing help
This page
Discuss this page
Post a comment
Printable version
Context
Page history
What links here
Related changes
My pages
Create an account or log in
Special pages
New pages
File list
Statistics
Bug reports
More...