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Gene Expression Prediction (DREAM3, Challenge 3)
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Synopsis
Gene expression time course data is provided for four different strains of yeast (S. Cerevisiae), after perturbation of the cells. The challenge is to predict the rank order of induction/repression of a small subset of genes (the "prediction targets") in one of the four strains, given complete data for three of the strains, and data for all genes except the prediction targets in the other strain. You are also allowed to use any information that is in the public domain and are expected to be forthcoming about what information was used.
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About the Data
- Data generously provided by Neil Clarke, Genome Institute of Singapore
- Data may not be published without permission from the data provider.
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Best Performer
- GustafssonHornquistSweden: Mika Gustafsson and Michael Hornquist, Linkoping University
- dreamteam2008: Jianhua Ruan, University of Texas at San Antonio
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Take Action
- Full Description (archival)
- Team Rankings
- Download Data
- Download Gold Standard
- Download Evaluation Scripts
- Download Team Predictions (anonymous)