DREAM2: The 2nd DREAM Conference

From Dream Initiative

The program features an exciting group of Invited Speakers and the presentation of papers accepted by our Program Committee. Besides this usual conference format, the second DREAM Conference will feature the discussion of predictions of a set of five DREAM challenges. Each challenge is composed of one or more dataset which originated from a network unknown to the participants to the challenge. The predictors are invited to infer as best as possible the network from which the data originated. The actual networks, and the results of the predictions will be disclosed at the conference.



Contents

Give us Feedback

Provide feedback on the
DREAM2 conference
by adding a comment in
the DREAM Discussion Forum
This forum is intended for discussion of anything related to Reverse Engineering in biological systems. Please feel free to comment on recent papers, interesting conferences or anything else related to pathway inference.

Explore the results of the DREAM challenges

See Results and scores of the
DREAM2 Network Inference Challenge
  • Results are described for each challenge and sub-challenge.
  • Team names have been anonymized in the results
  • The best performers for each challenge will be announced
  • Precision at different recall values are listed for each prediction
  • Area under the precision-recall and ROC are listed for each prediction

Conference Dates And Venue

December 3 and 4, 2007
New York Academy of Sciences
New York, NY


Conference Registration

Registration to the DREAM2 conference is open. Registration is processed by the NY Academy of Sciences.


Conference Program

The program of the 2nd DREAM COnference features an exciting group of Invited Speakers, the presentation of papers accepted by our Program Committee, and the presentation of the best network predictions from our data challenges.


Information on Lodging

Hotel rates in Manhattan are extremely variable, going from expensive to very expensive. To get an idea of the range in prices, please take a look at the following list of hotels and rates. Note that the list contains some hotels in Brooklyn and some in Jersey City (the latter just one train station accross the the Hudson River away from the NYAS). We are providing this list only as a reference. There may be many other more convenient and less expensive hotels not included in this list. Unfortunately we couldn't find hotels that give special conference rates. If you need to know how to get from your hotel to the DREAM2 conference at the NYAS you can use the New York City Transit Trip Planner, or the New York City subway map.


Call for Oral Presentations, Papers and Posters

We are requesting papers and posters
for the DREAM2 conference



Call for Predictions of Networks from Data

The DREAM2 Network Inference Challenge

( PREDICTION UPLOADING AVAILABLE THROUGHOUT OCT 22 )

  • A list of proteins some of which interact
  • A synthetic biology circuit transfected to an in-vivo organism
  • The targets of a TF, to be inferred from gene expression data
  • The GRN of a model organism to be inferred from gene expression data
  • An in-silico generated network with simulated "gene expression data"


Important Dates

Regular Paper Submissions

Submission Deadline Extension
The new deadline for paper and poster submission is Monday October 8th.


Week of July 23: First call for papers and poster abstracts.
Oct 1: Papers and poster abstract OLD submission deadline.
Oct 8: Papers and poster abstract NEW submission deadline.
Nov 1: Paper acceptance decisions issued. Early registration deadline.
Dec 3-4: Conference dates.
Jan 18, 2008: Revised papers due to Molecular Systems Biology. If the authors participated in the challenge, the revisions may include the results of the challenge.
Feb 1, 2008: Final decision for publication in Molecular Systems Biology.
Feb 1, 2008: Revised papers due for those papers invited to publish in the Proceedings of the DREAM2 (Annals of the NYAS). If the authors participated in the challenge, the revisions may include a section with the results of the challenge.

Predictions Submissions

Challenge Submission Deadline Extension
The new deadline for submissions of challenge predictions is Monday October 22nd.


Week of July 23: Call for participation in the challenge. Challenges posted.
Oct 15: OLD Submission deadline.
Oct 22: NEW Submission deadline.
Nov 1: Deadline for early registration to conference.
Nov 15: Notifications to predictors of their scores and ranks.
Dec 3-4: Conference Dates.
Feb 1, 2008: Deadline for submission of best predictions as papers to be included as contributions in the Proceedings of the 2nd DREAM Conference (Annals of the NYAS.)


Invited Speakers

Andrea Califano. Tim Gardner, Ravi Iyengar, Fritz Roth, Chris Sander, Ron Shamir, Ilya Shmulevich, Mike Snyder, Peter Sorger, Dennis Vitkup, Ioannis Xenarios.

Program Committee

Andre Levchenko, Avi Ma'ayan, Brandilyn Stigler, Christina Leslie, Eduardo Sontag, Fritz Roth, Harel Weinstein, Igor Jurisica, Ilya Shmulevich, Ioannis Xenarios, Ivet Bahar, Jean-Loup M. Faulon, Jesper Tegner, Jim Collins, Kathleen Marchal, Luis Mendoza, Madan Babu Mohan, Mark Gerstein, Monah Singh, Rune Linding, Satoru Miyano, Seungchan Kim, T Ravasi, Ted Perkins, Tim Elston, Vesteinn Thorsson, Winfried Just, Yannis Kevrekidis, Yuval Kluger, Alex Hartemink, Pablo Iglesias, Adam Margolin, Edward R. Dougherty, Frank Doyle, Gyan Bhanot, Joaquin Dopazo, Michael Samoilov, Pascal Kahlem, Mike Mackey, Denis Thieffry, John Moult, Jeremy Rice, John Wagner, Jose Vilar, Gary Bader, Ilya Nemenman, Leon Glass, Yuhai Tu.

DREAM2 Sponsors

Columbia University Center for Multi scale Analysis Genomic and Cellular Networks (MAGNet)
NIH Roadmap Initiative
IBM Computational Biology Center
The New York Academy of Sciences
Merck Research Laboratories


Retrieved from "http://wiki.c2b2.columbia.edu/dream/index.php/DREAM2:_The_2nd_DREAM_Conference"

This page has been accessed 14,096 times. This page was last modified 22:45, 18 February 2008.

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