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Challenges
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DREAM4 (2009) (Submission window: September 15 - October 15, 2009)
- Peptide Recognition Domain (PRD) Specificity Prediction - Predict protein-protein interactions at the level of binding domains and peptides
- DREAM4 In Silico Network Challenge - Infer simulated gene regulation networks and predict gene expression measurements
- Predictive Signaling Network Modeling - Predict phosphoprotein measurements using an interpretable, predictive network
- Download DREAM4 Data - website registration required
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DREAM3 (2008)
- Signaling Cascade Identification - Infer a signaling network from flow cytometery data
- Signaling Response Prediction - Predict missing protein concentrations from a large corpus of measurements
- Gene Expression Prediction - Predict missing gene expression measurements
- DREAM3 In Silico Network Challenge - Infer simulated gene regulation networks
- Download DREAM3 Data - website registration required
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DREAM2 (2007)
- BCL6 Transcriptional Target Prediction - Predict the genes that a transcription factor binds to
- Protein-Protein Interaction Network Inference - Predict a PPI network of 47 proteins
- Synthetic Five-Gene Network Inference - Infer a gene regulation network from qPCR and microarray measurements
- DREAM2 In Silico Network Challenge - Infer various network topologies from simulated "measurements"
- Genome-Scale Network Inference - Reconstruct a genome scale regulatory network from a large collection of microarrays
- Download DREAM2 Data - website registration required