Software:Protein-DNA Modeling Interface Download files

From Honiglab_public

Files to Download

See explanation document for description of these files here

• intf_model.exe:Linux compiled executable. For source code contact Trevor Siggers: tws11 < at> columbia.edu

• pdb_to_Amber.pl: Perl script for PDB file format conversion

• comfile: Example command file (COMFILE)

• RESLIST: Example RESLIST file

• AMBER98.top, AMBER98_0.5Phosph.top: Two topology files.

• Xiang_large_TOR.lib, Xiang_medium_XYZ.lib: Torsional and cartesian sidechain rotamer library files.

• pol, nopol: Rotatable/polar hydrogen description files.