CaBIO API 4.0 Migration Development notes

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  • First, download cabio40_java_client.zip from 
 http://ncicb.nci.nih.gov/download/downloadcabio.jsp
  • Extract cabio40_java_client.zip to your local file system.(For example, C:\cabio40_java_client)
  • Copy all jar files from C:\cabio40_java_client\lib to 
  ..\annotations\lib\cabio40_java_client
  • Copy all xml/xsd files from C:\cabio40_java_client\conf to 
  ..\geworkbench-core\conf
  • Add all new cabio40 jars to the classpath of annotations component project.
  • Add all new cabio40 jars to the classpath of geworkbench-core project.
  • Make required changes in GeneAnnotationImpl.java and GeneSearchCriteriaImpl.java
  • Remove client.jar from 
 ..\annotations\lib
  • Remove all properties/xsd files for caBIO API 3.1 from 
 ..\annotations\lib
  • Remove ApplicationServiceClientImpl.java
  • Compile the source code and run geworkbench-core with eclipes
  • Make sure to use jdk 1.5.0_08 or later version.


Issues:
  • It is not good to add jar files and properties/xml/xsd files to geworkbench-core project.
Retrieved from "http://wiki.c2b2.columbia.edu/informatics/index.php/CaBIO_API_4.0_Migration_Development_notes"
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