geWorkbench - User contributions [en]

User talk:Zhang

2008-09-24T21:25:09Z

Zhang:

Projects

1. [[caArray knowledge transfer]].

2. [[caArray documentation]]: how to build caArray

3. [[caTissue]]

4. [[geWorkbench release process]]: Step by step guide for a new release.

5. [[Pudge]]

6. [[SPLASH]]: cron job

7. [[Others]]

User talk:Zhang

2008-09-19T14:21:18Z

Zhang:

User talk:Zhang

2008-09-19T13:56:43Z

Zhang:

Projects

1. [[caArray knowledge transfer]].

2. [[caArray documentation]]: how to build caArray

3. [[SPLASH]]: cron job

4. [[geWorkbench release process]]: Step by step guide for a new release.

5. [[caTissue]]

6. [[Pudge]]

User talk:Zhang

2008-09-18T17:26:02Z

Zhang:

File:UILuncher.PNG

2008-09-16T15:42:24Z

Zhang:

File:IA UI.PNG

2008-09-16T15:26:37Z

Zhang:

File:Build.PNG

2008-09-16T15:18:55Z

Zhang:

File:BillBoard.PNG

2008-09-16T15:18:46Z

Zhang:

File:Properties.PNG

2008-09-16T15:18:34Z

Zhang:

File:ProjectInfo.PNG

2008-09-16T15:18:23Z

Zhang:

File:Main.PNG

2008-09-16T15:06:36Z

Zhang:

File:Start.PNG

2008-09-16T15:00:18Z

Zhang:

User talk:Zhang

2008-09-15T16:06:51Z

Zhang:

Projects

1. [[caArray knowledge transfer]].

2. [[caArray documentation]]: how to build caArray

3. [[SPLASH]]: cron job

4. [[geWorkbench release process]]: Step by step guide for a new release.

User talk:Zhang

2008-09-10T18:30:57Z

Zhang:

Projects

1. [[caArray knowledge transfer]].

2. [[caArray documentation]]: how to build caArray

3. [[SPLASH]]: cron job

User talk:Zhang

2008-09-10T17:47:34Z

Zhang:

Projects

1. caArray knowledge transfer.

2. caArray documentation: how to build caArray

3. SPLASH: cron job

User talk:Zhang

2008-09-10T17:47:22Z

Zhang:

Projects

1. caArray knowledge transfer.
2. caArray documentation: how to build caArray
3. SPLASH: cron job

Download and Installation

2006-08-22T17:40:43Z

Zhang: /* Downloads */

{{DownloadTopNav}}

==Software Requirements==
To run geWorkbench you will need to have '''Sun Java J2SE 5.0''' or higher installed on your computer (if the JRE is not already installed on your computer you can get it from Sun's Java Web site, http://java.sun.com/j2se/1.5.0/download.jsp). geWorkbench is downloaded as a self-installing package with support for Windows, Linux and MAC OS-X.

==Hardware Requirements==
Testing of geWorkbench is done on machines with 1 GB of memory. 512 MB should be adequate for most geWorkbench modules. Working with large datasets (100s of arrays) may require additional memory.

==IMPORTANT NOTICE ABOUT LICENSE==
Use of geWorkbench is governed by the rules specified in the [[geWorkbench License | software license]]. Please make sure to read the license and understand your obligations before proceeding to download the application.

==Downloads==

Up to date versions of geWorkbench (current version -> 1.0.4, Friday August 18th, 2006) and the geWorkbench Software Development Kit (current version -> 1.0.1) can be downloaded from our project page at NCI's GForge repository:
http://gforge.nci.nih.gov/frs/?group_id=78
If you wish to receive announcements about new application and SDK releases please subscribe to the mailing list [http://gforge.nci.nih.gov/mailman/listinfo/geworkbench-announce geworkbench-announce@gforge.nci.nih.gov]. Other available mailing lists are described in the [[Community]] section of our site.

==Installation Instructions==

===Windows Instructions:===

*After downloading, double-click geWorkbench_v1.0.4_Windows_installer.exe

===Mac OS X Instructions:===

*After downloading, double-click geworkbench_v1.0.4_Mac_installer.zip

*Notes
**Requires Mac OS X 10.4 or later
**The compressed installer should be recognized by Stuffit Expander and should automatically be expanded after downloading. If it is not expanded, you can expand it manually using StuffIt Expander 6.0 or later.
**If you have any problems launching the installer once it has been expanded, make sure that the compressed installer was expanded using Stuffit Expander.

===Linux Instructions:===

*After downloading open a shell and, cd to the directory where you downloaded the installer.
*At the prompt type: sh ./geWorkbench_v1.0.4_Linux_installer.bin

==Tutorial data==

[[Media:tutorial_data.zip|tutorial_data.zip]] (3.586 MB) - data files in several different formats useful for the tutorials or just trying out geWorkbench.

[{{SERVER}}/workbench/data/webmatrix.zip webmatrix.zip] (6 MB) - a large (100 array) microarray dataset in the geWorkbench matrix format. Data is from the lab of Riccardo Dalla-Favera, Columbia University, and is provided only for use in learning and testing geWorkbench.

Download and Installation

2006-08-22T16:32:21Z

Zhang: /* Downloads */

{{DownloadTopNav}}

==Software Requirements==
To run geWorkbench you will need to have '''Sun Java J2SE 5.0''' or higher installed on your computer (if the JRE is not already installed on your computer you can get it from Sun's Java Web site, http://java.sun.com/j2se/1.5.0/download.jsp). geWorkbench is downloaded as a self-installing package with support for Windows, Linux and MAC OS-X.

==Hardware Requirements==
Testing of geWorkbench is done on machines with 1 GB of memory. 512 MB should be adequate for most geWorkbench modules. Working with large datasets (100s of arrays) may require additional memory.

==IMPORTANT NOTICE ABOUT LICENSE==
Use of geWorkbench is governed by the rules specified in the [[geWorkbench License | software license]]. Please make sure to read the license and understand your obligations before proceeding to download the application.

==Downloads==

Up to date versions of geWorkbench (current version -> 1.0.4, Monday August 18th, 2006) and the geWorkbench Software Development Kit (current version -> 1.0.1) can be downloaded from our project page at NCI's GForge repository:
http://gforge.nci.nih.gov/frs/?group_id=78
If you wish to receive announcements about new application and SDK releases please subscribe to the mailing list [http://gforge.nci.nih.gov/mailman/listinfo/geworkbench-announce geworkbench-announce@gforge.nci.nih.gov]. Other available mailing lists are described in the [[Community]] section of our site.

==Installation Instructions==

===Windows Instructions:===

*After downloading, double-click geWorkbench_v1.0.4_Windows_installer.exe

===Mac OS X Instructions:===

*After downloading, double-click geworkbench_v1.0.4_Mac_installer.zip

*Notes
**Requires Mac OS X 10.4 or later
**The compressed installer should be recognized by Stuffit Expander and should automatically be expanded after downloading. If it is not expanded, you can expand it manually using StuffIt Expander 6.0 or later.
**If you have any problems launching the installer once it has been expanded, make sure that the compressed installer was expanded using Stuffit Expander.

===Linux Instructions:===

*After downloading open a shell and, cd to the directory where you downloaded the installer.
*At the prompt type: sh ./geWorkbench_v1.0.4_Linux_installer.bin

==Tutorial data==

[[Media:tutorial_data.zip|tutorial_data.zip]] (3.586 MB) - data files in several different formats useful for the tutorials or just trying out geWorkbench.

[{{SERVER}}/workbench/data/webmatrix.zip webmatrix.zip] (6 MB) - a large (100 array) microarray dataset in the geWorkbench matrix format. Data is from the lab of Riccardo Dalla-Favera, Columbia University, and is provided only for use in learning and testing geWorkbench.

Download and Installation

2006-08-22T16:31:44Z

Zhang: /* Linux Instructions: */

{{DownloadTopNav}}

==Software Requirements==
To run geWorkbench you will need to have '''Sun Java J2SE 5.0''' or higher installed on your computer (if the JRE is not already installed on your computer you can get it from Sun's Java Web site, http://java.sun.com/j2se/1.5.0/download.jsp). geWorkbench is downloaded as a self-installing package with support for Windows, Linux and MAC OS-X.

==Hardware Requirements==
Testing of geWorkbench is done on machines with 1 GB of memory. 512 MB should be adequate for most geWorkbench modules. Working with large datasets (100s of arrays) may require additional memory.

==IMPORTANT NOTICE ABOUT LICENSE==
Use of geWorkbench is governed by the rules specified in the [[geWorkbench License | software license]]. Please make sure to read the license and understand your obligations before proceeding to download the application.

==Downloads==

Up to date versions of geWorkbench (current version -> 1.0.4, Monday August 21st, 2006) and the geWorkbench Software Development Kit (current version -> 1.0.1) can be downloaded from our project page at NCI's GForge repository:
http://gforge.nci.nih.gov/frs/?group_id=78
If you wish to receive announcements about new application and SDK releases please subscribe to the mailing list [http://gforge.nci.nih.gov/mailman/listinfo/geworkbench-announce geworkbench-announce@gforge.nci.nih.gov]. Other available mailing lists are described in the [[Community]] section of our site.

==Installation Instructions==

===Windows Instructions:===

*After downloading, double-click geWorkbench_v1.0.4_Windows_installer.exe

===Mac OS X Instructions:===

*After downloading, double-click geworkbench_v1.0.4_Mac_installer.zip

*Notes
**Requires Mac OS X 10.4 or later
**The compressed installer should be recognized by Stuffit Expander and should automatically be expanded after downloading. If it is not expanded, you can expand it manually using StuffIt Expander 6.0 or later.
**If you have any problems launching the installer once it has been expanded, make sure that the compressed installer was expanded using Stuffit Expander.

===Linux Instructions:===

*After downloading open a shell and, cd to the directory where you downloaded the installer.
*At the prompt type: sh ./geWorkbench_v1.0.4_Linux_installer.bin

==Tutorial data==

[[Media:tutorial_data.zip|tutorial_data.zip]] (3.586 MB) - data files in several different formats useful for the tutorials or just trying out geWorkbench.

[{{SERVER}}/workbench/data/webmatrix.zip webmatrix.zip] (6 MB) - a large (100 array) microarray dataset in the geWorkbench matrix format. Data is from the lab of Riccardo Dalla-Favera, Columbia University, and is provided only for use in learning and testing geWorkbench.

Download and Installation

2006-08-22T16:31:23Z

Zhang: /* Mac OS X Instructions: */

{{DownloadTopNav}}

==Software Requirements==
To run geWorkbench you will need to have '''Sun Java J2SE 5.0''' or higher installed on your computer (if the JRE is not already installed on your computer you can get it from Sun's Java Web site, http://java.sun.com/j2se/1.5.0/download.jsp). geWorkbench is downloaded as a self-installing package with support for Windows, Linux and MAC OS-X.

==Hardware Requirements==
Testing of geWorkbench is done on machines with 1 GB of memory. 512 MB should be adequate for most geWorkbench modules. Working with large datasets (100s of arrays) may require additional memory.

==IMPORTANT NOTICE ABOUT LICENSE==
Use of geWorkbench is governed by the rules specified in the [[geWorkbench License | software license]]. Please make sure to read the license and understand your obligations before proceeding to download the application.

==Downloads==

Up to date versions of geWorkbench (current version -> 1.0.4, Monday August 21st, 2006) and the geWorkbench Software Development Kit (current version -> 1.0.1) can be downloaded from our project page at NCI's GForge repository:
http://gforge.nci.nih.gov/frs/?group_id=78
If you wish to receive announcements about new application and SDK releases please subscribe to the mailing list [http://gforge.nci.nih.gov/mailman/listinfo/geworkbench-announce geworkbench-announce@gforge.nci.nih.gov]. Other available mailing lists are described in the [[Community]] section of our site.

==Installation Instructions==

===Windows Instructions:===

*After downloading, double-click geWorkbench_v1.0.4_Windows_installer.exe

===Mac OS X Instructions:===

*After downloading, double-click geworkbench_v1.0.4_Mac_installer.zip

*Notes
**Requires Mac OS X 10.4 or later
**The compressed installer should be recognized by Stuffit Expander and should automatically be expanded after downloading. If it is not expanded, you can expand it manually using StuffIt Expander 6.0 or later.
**If you have any problems launching the installer once it has been expanded, make sure that the compressed installer was expanded using Stuffit Expander.

===Linux Instructions:===

*After downloading open a shell and, cd to the directory where you downloaded the installer.
*At the prompt type: sh ./geworkbench_v1.0.3_Linux_installer.bin

==Tutorial data==

[[Media:tutorial_data.zip|tutorial_data.zip]] (3.586 MB) - data files in several different formats useful for the tutorials or just trying out geWorkbench.

[{{SERVER}}/workbench/data/webmatrix.zip webmatrix.zip] (6 MB) - a large (100 array) microarray dataset in the geWorkbench matrix format. Data is from the lab of Riccardo Dalla-Favera, Columbia University, and is provided only for use in learning and testing geWorkbench.

Download and Installation

2006-08-22T16:30:48Z

Zhang: /* Windows Instructions: */

{{DownloadTopNav}}

==Software Requirements==
To run geWorkbench you will need to have '''Sun Java J2SE 5.0''' or higher installed on your computer (if the JRE is not already installed on your computer you can get it from Sun's Java Web site, http://java.sun.com/j2se/1.5.0/download.jsp). geWorkbench is downloaded as a self-installing package with support for Windows, Linux and MAC OS-X.

==Hardware Requirements==
Testing of geWorkbench is done on machines with 1 GB of memory. 512 MB should be adequate for most geWorkbench modules. Working with large datasets (100s of arrays) may require additional memory.

==IMPORTANT NOTICE ABOUT LICENSE==
Use of geWorkbench is governed by the rules specified in the [[geWorkbench License | software license]]. Please make sure to read the license and understand your obligations before proceeding to download the application.

==Downloads==

Up to date versions of geWorkbench (current version -> 1.0.4, Monday August 21st, 2006) and the geWorkbench Software Development Kit (current version -> 1.0.1) can be downloaded from our project page at NCI's GForge repository:
http://gforge.nci.nih.gov/frs/?group_id=78
If you wish to receive announcements about new application and SDK releases please subscribe to the mailing list [http://gforge.nci.nih.gov/mailman/listinfo/geworkbench-announce geworkbench-announce@gforge.nci.nih.gov]. Other available mailing lists are described in the [[Community]] section of our site.

==Installation Instructions==

===Windows Instructions:===

*After downloading, double-click geWorkbench_v1.0.4_Windows_installer.exe

===Mac OS X Instructions:===

*After downloading, double-click geworkbench_v1.0.3_Mac_installer.zip

*Notes
**Requires Mac OS X 10.2 or later
**The compressed installer should be recognized by Stuffit Expander and should automatically be expanded after downloading. If it is not expanded, you can expand it manually using StuffIt Expander 6.0 or later.
**If you have any problems launching the installer once it has been expanded, make sure that the compressed installer was expanded using Stuffit Expander.

===Linux Instructions:===

*After downloading open a shell and, cd to the directory where you downloaded the installer.
*At the prompt type: sh ./geworkbench_v1.0.3_Linux_installer.bin

==Tutorial data==

[[Media:tutorial_data.zip|tutorial_data.zip]] (3.586 MB) - data files in several different formats useful for the tutorials or just trying out geWorkbench.

[{{SERVER}}/workbench/data/webmatrix.zip webmatrix.zip] (6 MB) - a large (100 array) microarray dataset in the geWorkbench matrix format. Data is from the lab of Riccardo Dalla-Favera, Columbia University, and is provided only for use in learning and testing geWorkbench.

Download and Installation

2006-08-22T16:30:30Z

Zhang: /* Downloads */

{{DownloadTopNav}}

==Software Requirements==
To run geWorkbench you will need to have '''Sun Java J2SE 5.0''' or higher installed on your computer (if the JRE is not already installed on your computer you can get it from Sun's Java Web site, http://java.sun.com/j2se/1.5.0/download.jsp). geWorkbench is downloaded as a self-installing package with support for Windows, Linux and MAC OS-X.

==Hardware Requirements==
Testing of geWorkbench is done on machines with 1 GB of memory. 512 MB should be adequate for most geWorkbench modules. Working with large datasets (100s of arrays) may require additional memory.

==IMPORTANT NOTICE ABOUT LICENSE==
Use of geWorkbench is governed by the rules specified in the [[geWorkbench License | software license]]. Please make sure to read the license and understand your obligations before proceeding to download the application.

==Downloads==

Up to date versions of geWorkbench (current version -> 1.0.4, Monday August 21st, 2006) and the geWorkbench Software Development Kit (current version -> 1.0.1) can be downloaded from our project page at NCI's GForge repository:
http://gforge.nci.nih.gov/frs/?group_id=78
If you wish to receive announcements about new application and SDK releases please subscribe to the mailing list [http://gforge.nci.nih.gov/mailman/listinfo/geworkbench-announce geworkbench-announce@gforge.nci.nih.gov]. Other available mailing lists are described in the [[Community]] section of our site.

==Installation Instructions==

===Windows Instructions:===

*After downloading, double-click geworkbench_v1.0.3_Windows_installer.exe

===Mac OS X Instructions:===

*After downloading, double-click geworkbench_v1.0.3_Mac_installer.zip

*Notes
**Requires Mac OS X 10.2 or later
**The compressed installer should be recognized by Stuffit Expander and should automatically be expanded after downloading. If it is not expanded, you can expand it manually using StuffIt Expander 6.0 or later.
**If you have any problems launching the installer once it has been expanded, make sure that the compressed installer was expanded using Stuffit Expander.

===Linux Instructions:===

*After downloading open a shell and, cd to the directory where you downloaded the installer.
*At the prompt type: sh ./geworkbench_v1.0.3_Linux_installer.bin

==Tutorial data==

[[Media:tutorial_data.zip|tutorial_data.zip]] (3.586 MB) - data files in several different formats useful for the tutorials or just trying out geWorkbench.

[{{SERVER}}/workbench/data/webmatrix.zip webmatrix.zip] (6 MB) - a large (100 array) microarray dataset in the geWorkbench matrix format. Data is from the lab of Riccardo Dalla-Favera, Columbia University, and is provided only for use in learning and testing geWorkbench.