All Classes

AbstractAnalysis AbstractAnalysisLabelComparator AbstractCluster AbstractGridAnalysis AbstractResource AbstractSaveableParameterPanel AbstractTestDSAnnotationContext AbstractTraining AbstractTrainingPanel AcceptTypes AdjacencyMatrix AdjacencyMatrixDataSet AdjacencyMatrixEvent AdjacencyMatrixEvent.Action AffyFileFormat AffymetrixParser AffyParseContext AffyResource AlgorithmEvent AlgorithmEventListener AlgorithmExecutionResults AlgorithmSelectionPanel Analysis AnalysisInvokedEvent AnalysisParameters AnnotationAnalysisEvent AnnotationParser AnnotationsEvent AppEventListener AppEventListenerException APSerializable ArrayIterator ArrayUtil AssociationPanelEvent Asynchronous AutoListModel BaseException BaseRuntimeException BinaryEncodeDecode BisonFactory BroadcastEventRegistry BrowserLauncher BulkTest BusySwingWorker CaArray2Experiment CaArrayEvent CaARRAYPanel CaArrayQueryEvent CaARRAYQueryPanel CaArrayQueryResultEvent CaArrayRequestEvent CaArrayRequestHybridizationListEvent CaArrayResource CaArrayReturnHybridizationListEvent CaArraySuccessEvent CalculateDifferenceErrors CasCallReturn CaScriptEmulator CasDataPlug CasDataType CasDataTypeImport CasEngine CasException CASLexer CASParser CasPreData CasReturn CASSemantics CASSemanticsTokenTypes CAStokensTokenTypes CASWalker CASWalkerTokenTypes CELFileFormat CellularNetWorkElementInformation ChoiceField ClassificationRunnerPlugin ClassifierException ClassSearcher CleanDataEvent Closable Cluster ClusterEvent ClusteringAnalysis ClusterStatistics ClusterUtils Collection ColorContext ColorContextUtils ColorScale Combinations CommentsEvent CommentsEventOld CommentsPanel CompareSigmaEstimates ComparisonHistogram ComponentClassLoader ComponentClassloaderTest ComponentConfigurationManager ComponentConfigurationManager2 ComponentConfigurationManagerMenu ComponentConfigurationManagerUpdateEvent ComponentConfigurationManagerWindow ComponentConfigurationManagerWindow2 ComponentDockingEvent ComponentDockingListener ComponentInterface ComponentMetadata ComponentObjectInputStream ComponentRegistry ComponentResource ConfigChooser ConfigWriter CorrelationDistance CSAffyMarkerValue CSAffyMicroarraySet CSAlignmentResultSet CSAncillaryDataSet CSAnnotationContext CSAnnotationContextManager CSAnnotationContextManager.SerializableContexts CSAnnotationContextTest CSAnnotationRegistry CSAnnotationType CSAnnotLabel CSAnnotPanel CSAnnotValue CSAnovaResultSet CSChipchipSet CSClassifier CSCriteria CSCriteriaTest CSDataSet CSDataSetView CSDataSetViewTest CSDescribable CSExpressionMarker CSExpressionMarkerValue CSExpressionStats CSExprMicroarraySet CSExtendable CSGeneMarker CSGenepixMarkerValue CSGenepixMarkerValue.ComputeSignalMethod CSGenotypeMarker CSGenotypeMicroarraySet CSGenotypicMarkerValue CSGSEAResultDataSet CSHierClusterDataSet CSItemList CSMarkerManager CSMarkerValue CSMarkerVector CSMasterRegulatorResultSet CSMatchedMatrixPattern CSMatchedPattern CSMatchedSeqPattern CSMatrixPattern CSMatrixReduceExperiment CSMatrixReduceSet CSMicroarray CSMicroarraySet CSMicroarraySetView CSMicroarraySetViewTest CSMicroarrayTest CSPanel CSPanelTest CSPatternMatch CSPCADataSet CSPositionSpecificAffinityMatrix CSProbeIntensityArray CSProteinStructure CSPrtAnnotResultSet CSPrtDBResultSet CSPSAMMatch CSPSAMRegistration CSPSAMRegistration.Organism CSPValued CSSeqCmplxRegistration CSSeqPattern CSSeqPatternMatch CSSeqRegistration CSSequence CSSequenceSet CSSequentialItemList CSSignificanceResultSet CSSOMClusterDataSet CSTTestResultSet CSUnigene CSVisualClassifier Cursor DataParseContext DataSetFileFormat DataSetNode DataSetSaveNode DataSetSubNode DataSource Debug DefaultColorContext DefaultHierCluster DefaultHierClusterTest DefaultIconAssignments DefaultIdentifiable DefaultSOMCluster DependencyManager DirtyDataEvent DiscoverEvent DiscoverEvent.Action Display Distance Documentation DoubleField DoubleIterator DSAffyIdentifiable DSAffyMarkerValue DSAlignmentResultSet DSAncillaryDataSet DSAnnotated DSAnnotatedPanel DSAnnotationContext DSAnnotationContextManager DSAnnotationRegistry DSAnnotationSource DSAnnotationType DSAnnotLabel DSAnnotPanel DSAnnotValue DSAnovaResultSet DSBioObject DSClassification DSClusterDataSet DSCollection DSCriteria DSCriterion DSDataSet DSDataSetView DSDescribable DSDiscoveryStatus DSExtendable DSGeneMarker DSGenepixMarkerValue DSGenotypicMarkerValue DSGSEAResultDataSet DSHasActivation DSHierClusterDataSet DSIdentifiable DSItemList DSLocusLinkIdentifiable DSMarkerValue DSMasterRagulatorResultSet DSMatchedPattern DSMatchedSeqPattern DSMatrixDataSet DSMatrixDataSetView DSMatrixPattern DSMatrixReduceExperiment DSMatrixReduceSet DSMicroarray DSMicroarraySet DSMicroarraySetView DSMutableMarkerValue DSNamed DSPanel DSPattern DSPatternDiscovery DSPatternMatch DSPCADataSet DSPositionSpecificAffintyMatrix DSProbeIntensityArray DSProteinStructure DSPrtAnnotResultSet DSPrtDBResultSet DSPValue DSPValued DSRangeMarker DSSeqPatternMatch DSSequence DSSequenceSet DSSequential DSSignificanceResultSet DSSOMClusterDataSet DSTTestResultSet DSUnigene DynamicMenuItemException Edge EdgeList EdgeListDataSet EdgeListResource EdgeMatrix EngineIcons EuclideanDistance Event EventException EventSource ExampleFileFilter ExampleFilter ExperimentInformationPanel ExpressionColorContext ExpressionFileFormat ExpressionPValueColorContext ExpressionResource FastMatrixModel FastMatrixModel.Metric Field FileField FileFormat FileOpenHandler FilePathnameUtils FileUtil FilteringAnalysis FilteringAnalysis.CriterionOption FilteringEvent FlexiblePattern FunctionBase FunctionIntegrator FunctionParameters GeawConfigObject GeawConfigRule Gene GeneChromosomeMatcher GeneNetworkEdge GeneNetworkEdgeImpl GeneOntologyTree GeneOntologyUtil GenePixFileFormat GenepixParseContext GenePixParser GenepixResource GeneSelectorEvent GeneTaggedEvent GenomeAnnotation GenotypeColorContext GeoSeriesMatrixParser GeWorkbenchCaARRAYAdaptor GlobalPreferences GoAnalysisResult GOTerm GUIFramework GUIWindowObject HashMatrix HashVector HierarchicalProgressEvent HierCluster HierClusterAnalysisEvent HierClusterModelEvent HierClusterModelEventListener HighlightCurrentParameterThread HistoryEvent HistoryPanel Icons IdentifiableImpl IFunction ImageData ImageNode ImageSnapshotEvent ImageSnapshotEvent.Action IndexSortComparator InputFileFormatException InteractionDetail IProbabilityFunctionBivariate IProbabilityFunctionUnivariate JAutoList JShapeButton JShapeDialog KFoldCrossValidation KFoldCrossValidation.CrossValidationData KProbabilityDensity LeafSOMCluster LED ListenerEventMismatchException ListenerRegistry ListenerRegistryImpl LoadData LoginPanelModelEvent LoginPanelModelListener LogStats MAGEPanel MAGEResource MAGEResource2 MageTabFileFormat MalformedMenuItemException MarkerHierCluster MarkerInfoPanelSelectedEvent MarkerInfoPanelSelectedListener MarkerPanelEvent MarkerSelectedEvent MarkUsResultDataSet MatrixCreater MatrixModel MedusaCommand MedusaData MedusaDataSet MenuItemInfo MenuListener MicroarrayHierCluster MicroarrayNameChangeEvent MicroarraySetNode MicroarraySetViewEvent MicroarraySetViewListener MicroarrayViewEventBase MicroarrayVisualizer MindyData MindyDataSet MindyGeneMarker MindyResultRow ModulatorInfo ModulatorStatistics Module ModuleDiscoveryEvent MultipleMarkerEvent MutualInformation MutualInformationLibrary NCIPanel NCIParseContext NetBoostAnalysisData NetBoostData NetBoostDataSet Normal NormalizationEvent NormalizingAnalysis NotEventSourceException NotMenuListenerException NotVisualPluginException Overflow OWFileChooser PanelVisualProperties PanelVisualPropertiesManager Parameter ParameterActionListener ParameterKey ParameterPanel Parameters ParamValidationResults Pathway PatternDB PatternDisplay PatternFetchException PatternFileFormat PatternLocations PatternOfflet PatternOperations PatternSequenceDisplayUtil PatternSorter PatternTableModel PDBFileFormat PendingNodeCancelledEvent PendingNodeLoadedFromWorkspaceEvent PendingTreeNode PhenotypePanelEvent PhenotypeSelectedEvent PhenotypeSelectorEvent PluginClass PluginClassRegistry PluginClassRule PluginComponent PluginDescriptor PluginObject PluginRegistry PluginRule Preferences PreferencesDialog PreferencesDialog.FileFieldComponent PreferencesManager PreferencesMenu PrintUtils ProgressBar ProgressBar.IncrementModel ProgressBarEvent ProgressBarT ProgressBarT.IncrementModel ProgressChangeEvent ProgressChangeListener ProgressGraph ProjectEvent ProjectNode ProjectNodeAddedEvent ProjectNodeCompletedEvent ProjectNodePendingEvent ProjectNodePostCompletedEvent ProjectNodeRemovedEvent ProjectNodeRenamedEvent ProjectPanel ProjectSelection ProjectTreeNode PropertiesManager PropertiesMonitor ProteinAnnotationAnalysis ProteinDatabaseAnalysis ProteinSequenceAnalysis ProteinStructureAnalysis Publish PudgeResultSet QSort RandomNumberGenerator RandomSequenceGenerator Range RankSorter ReferenceImplMap RegularExpressionVerifier ReHighlightable RemoteResource RemoteResourceDialog RemoteResourceManager Resource SampleFileParser SaveFileFilterFactory SaveImage SaveTree Script SearchCriteria SequenceDiscoveryTableEvent SequenceFileFormat SequenceMarker SequencePanelEvent SequencePatternDisplayPanel SequencePatternUtils SequenceResource SequenceUtils SequenceViewWidget SequenceViewWidgetPanel SequentialPatternSource ShortCutMenu SimpleHierCluster SingleMarkerEvent SingleMicroarrayEvent SingleValueEditEvent Skin SkyLineResultDataSet SoapParmsDataSet SOFTFileFormat SOFTSeriesParser SOMCluster SOMClusterAnalysisEvent SOMClusterModelEvent SOMClusterModelEventListener SpearmanRankDistance SplashBitmap StatusBarEvent StatusChangeListener StringUtils StructureAnalysisEvent SubpanelChangedEvent Subscribe SwingModel SwingPropertyChangeSupport SwingWorker SwingWorker SwingWorker.StateValue SynchModel Synchronous SyntenyEvent TabDelimitedDataMatrixFileFormat TableChangeEvent TargetInfo TextField TrainingProgressListener TrainingTask TreeNodeRenderer TypeMap UIController UILauncher UniformFunction Util UtilsForTests ValidationException ValidationUtils VisualBuilder VisualMenu VisualPlugin VisualPropertiesDialog WorkspaceHandler