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Resource.broadcastListenerRegistry.
coupledListenerRegistry.
listener implements the sub-interface of
AppEventListener desribed by the listenerClass.
ActionListener with a JMenuItem.
maSet as a child node
to the tree node parent.
Cluster node as a child of this Cluster
newCluster as a child of this node.
Cluster as a child of this node
PropertyChangeListener to the listener list.
ComponentRegistry to add a task to this synch model.
visualPlugin to the container identified by the name
areaName.
visualPlugin to the container identified by the name
areaName.
AdjacencyMatrixEvent
AdjacencyMatrixEvent
Resource to allow handling Affy input files.forceUniqueValue.
forceUniqueValue.
Pathway information retrieved
from caBIO queriesClass object expected to implement an
AppEventListener interface, turns out not to.Identifiable interface.
Identifiable.
ObjectCreateRule.
bison
datatypesTestCase that can define both simple and bulk test methods.BulkTest instance that will run the
specified simple test.
Cluster
CSClassifier that now resides in the project panel.name.
name.
BulkTest.
Cluster
columnNames to be used when reading a array values
using NCI's MAGE API.
Comparable interface.
Comparable method that compares this
Cluster to another Hierarchical CLuster node.
PluginDescriptor created for this plugin.
get method.
PluginRegistry.
AffyMarkerValue.CSAffyMarkerValue object from the contents of
the AffyParseContext argument.
CSAffyMarkerValue object from the contents of
the NCIParseContext argument.
DSAnnotationRegistry.DSAnnotLabel that is based on an arbitrary object.DSAnnotValue that is based on an arbitrary object and a corresponding key.DSDataSet.Describable.GenepixMarkerValue.GenepixMarkerValue object from the contents of
the GenepixParseContext argument.
GenepixMarkerValue object from the contents of
the NCIParseContext argument.
DSItemList implementation that is backed by an ArrayList and a HashMap.DSAnnotationContext, which is
retrieved from the DSAnnotationContextManager.CSPanel.debugStatus == true, print the desiganted debug message.
broadcastListenerRegistry.
Cluster contract that encapsulates
functionality to handle Clusters generated from the Hierarchical Clustering
analysis methodIdentifiable interface.Describable interface.
Describable interface.
Describable interface.
VisualPlugin
interface) looses the keyboard focus.
ProgressBar
ProgressBarT
RUNTIME access to JavaDoc for use with the
caSCRIPT mechanism, similar to xdoclethttp://xdoclet.sourceforge.net/xdoclet/index.html functionalitydoInBackground
method is finished.
DSItemList.DSItemList.DSNamed objects, accessible by label.<menu-item>
block of the configuration file, is in conflict with the already existing menu
structure.VisualPlugin
interface) gains the keyboard focus.
PluginDescriptor objects.
SwingWorker for execution on a worker
thread.
PluginRegistry.
Experiment for the microarray baData.
Extendable interface.
Extendable interface.
Extendable interface.
ObjectCreateRule.
construct method has returned.
name be associated with at most one value.
name be associated with at most one value.
UILauncher stack
when processing the top-most tag, namely the pattern "geaw-config".Resource to allow handling Genepix input files.construct method.
MenuListener method that returns the appropriate
ActionListener to handle MenuEvent
generated by MenuItem referenced by menuKey
attribute
ActionListener that will be listening to a menu item.
Cluster nodes of this node
columnsToUse.
VisualPlugin method that returns a
Component which is the visual representation of the this
plugin.
Component that is the visual representation of
the implementing plugin.
BioAssayImpl[] object encapsulated by the resource.
DSDataSet object underlying this is view
Cluster
broadcastListenerRegistry.
coupledListenerRegistry.
AppEventListener that are
implemented by listener and have also been registered in this
registry.
FileFilter defined for Affy files.
FileFilter defined for Genepix files.
microarraySet that was the result of the filtering
operation.
Cluster
Cluster
Cluster
Cluster that are also leaves
Cluster that are also
leaves
broadcastListenerRegistry.
coupledListenerRegistry.
MarkerHierCluster node resulting from
Hierarchical Clustering Analysis representing Genetic Marker clusters
DSMarker contained in this LeafSOMCluster
DSMarker associated with this node
MicrorarrauSet from the designated
argument.
MicrorarraySet from the designated
argument.
Cluster in
the Hierarchical Cluster Tree that this Cluster is a part
of
Event was constructed with
Microarray associated with this node
MicroarraySet associated with this Event
MicroarrayHierCluster node resulting from
Hierarchical Clustering Analysis representing Microarray clusters
MicroarraySet on which the Clustering was performed
MicroarraySet used for Hierarchical Clustering
Analysis
MicroarraySet used for SOM Analysis
MicroarraySetView containing
MicroaraySet views
Cluster
Object
microarraySet that was the input to the filtering
operation.
Cluster which contains this Cluster as
a child.
Cluster node that is the parent of this
cluster.
Pathway object associated with this
Event
PathwayDiagram contained in the Pathway
instance
Pathway instance
progress bound property.
PropertyChangeSupport for this SwingWorker.
a; for tied
elements, their average rank is used for them.
a; for tied
elements, their average rank is used for them.
Reader modelled by this resource.
Resource object for the designated file.
Object containing the results of the algorithm execution
Object results obtained from a Clustering analysis