org.geworkbench.bison.datastructure.biocollections.lincs
Class LincsDataSet

java.lang.Object
  extended by java.util.AbstractCollection<E>
      extended by java.util.AbstractList<E>
          extended by java.util.ArrayList<T>
              extended by org.geworkbench.bison.datastructure.complex.panels.CSItemList<T>
                  extended by org.geworkbench.bison.datastructure.complex.panels.CSSequentialItemList<T>
                      extended by org.geworkbench.bison.datastructure.biocollections.CSDataSet<T>
                          extended by org.geworkbench.bison.datastructure.biocollections.CSAncillaryDataSet<DSMicroarray>
                              extended by org.geworkbench.bison.datastructure.biocollections.lincs.LincsDataSet
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, java.lang.Iterable<DSMicroarray>, java.util.Collection<DSMicroarray>, java.util.List<DSMicroarray>, java.util.RandomAccess, DSAncillaryDataSet<DSMicroarray>, DSDataSet<DSMicroarray>, DSItemList<DSMicroarray>, DSDescribable, DSExtendable, DSIdentifiable, DSNamed

public class LincsDataSet
extends CSAncillaryDataSet<DSMicroarray>

Version:
$Id: LincsDataSet.java
Author:
min you
See Also:
Serialized Form

Field Summary
 
Fields inherited from class org.geworkbench.bison.datastructure.biocollections.CSDataSet
columnOrder, compatibilityLabel, dataSetProperties, description, experimentInfo, extend, file, label
 
Fields inherited from class java.util.AbstractList
modCount
 
Constructor Summary
LincsDataSet(DSMicroarraySet parent, java.lang.String label)
           
 
Method Summary
 java.lang.String getAssayType()
           
 java.lang.String getCellLine()
           
 java.lang.String getDrug1()
           
 java.lang.String getDrug2()
           
 java.lang.String[] getfreeVariableNames()
           
 long[][] getLevelTwoIds()
           
 java.lang.String getMeasurement()
           
 double[][] getPValues()
           
 java.lang.String getTissue()
           
 boolean isExperimental()
           
 void isExperimental(boolean isExperimental)
           
 void setAssayType(java.lang.String assayType)
           
 void setCellLine(java.lang.String cellLine)
           
 void setDrug1(java.lang.String drug1)
           
 void setDrug2(java.lang.String drug2)
           
 void setFreeVariableNames(java.lang.String[] freeVariableNames)
           
 void setLevelTwoIds(long[][] levelTwoIds)
           
 void setMeasurement(java.lang.String measurement)
           
 void setPvalues(double[][] pValues)
           
 void setTissue(java.lang.String tissue)
           
 
Methods inherited from class org.geworkbench.bison.datastructure.biocollections.CSAncillaryDataSet
getParentDataSet, setParent
 
Methods inherited from class org.geworkbench.bison.datastructure.biocollections.CSDataSet
addNameValuePair, addObject, allowMultipleValues, clearName, forceUniqueValue, getColumnOrder, getCompatibilityLabel, getDataSetName, getDescription, getExperimentInformation, getFile, getID, getLabel, getObject, getValuesForName, isActive, isUniqueValue, setColumnOrder, setDescription, setExperimentInformation, setFile, setID, setLabel, toString, writeToFile
 
Methods inherited from class org.geworkbench.bison.datastructure.complex.panels.CSSequentialItemList
add, add, remove
 
Methods inherited from class org.geworkbench.bison.datastructure.complex.panels.CSItemList
addAll, clear, equals, get, hashCode, set, setLabel
 
Methods inherited from class java.util.ArrayList
addAll, clone, contains, ensureCapacity, get, indexOf, isEmpty, lastIndexOf, remove, removeRange, size, toArray, toArray, trimToSize
 
Methods inherited from class java.util.AbstractList
iterator, listIterator, listIterator, subList
 
Methods inherited from class java.util.AbstractCollection
containsAll, removeAll, retainAll
 
Methods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface org.geworkbench.bison.datastructure.biocollections.DSDataSet
addObject, getColumnOrder, getCompatibilityLabel, getDataSetName, getExperimentInformation, getFile, getObject, isActive, setColumnOrder, setExperimentInformation, setFile, writeToFile
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSDescribable
getDescription, setDescription
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSNamed
getLabel, setLabel
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSExtendable
addNameValuePair, allowMultipleValues, clearName, forceUniqueValue, getValuesForName, isUniqueValue
 
Methods inherited from interface org.geworkbench.bison.datastructure.complex.panels.DSItemList
get
 
Methods inherited from interface java.util.List
add, add, addAll, addAll, clear, contains, containsAll, equals, get, hashCode, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, size, subList, toArray, toArray
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSIdentifiable
getID, setID
 

Constructor Detail

LincsDataSet

public LincsDataSet(DSMicroarraySet parent,
                    java.lang.String label)
Method Detail

setTissue

public void setTissue(java.lang.String tissue)

getTissue

public java.lang.String getTissue()

setCellLine

public void setCellLine(java.lang.String cellLine)

getCellLine

public java.lang.String getCellLine()

setDrug1

public void setDrug1(java.lang.String drug1)

getDrug1

public java.lang.String getDrug1()

setDrug2

public void setDrug2(java.lang.String drug2)

getDrug2

public java.lang.String getDrug2()

setAssayType

public void setAssayType(java.lang.String assayType)

getAssayType

public java.lang.String getAssayType()

setMeasurement

public void setMeasurement(java.lang.String measurement)

getMeasurement

public java.lang.String getMeasurement()

setPvalues

public void setPvalues(double[][] pValues)

getPValues

public double[][] getPValues()

setLevelTwoIds

public void setLevelTwoIds(long[][] levelTwoIds)

getLevelTwoIds

public long[][] getLevelTwoIds()

isExperimental

public boolean isExperimental()

isExperimental

public void isExperimental(boolean isExperimental)

setFreeVariableNames

public void setFreeVariableNames(java.lang.String[] freeVariableNames)

getfreeVariableNames

public java.lang.String[] getfreeVariableNames()