org.geworkbench.bison.datastructure.bioobjects
Class SamResultData

java.lang.Object
  extended by java.util.AbstractCollection<E>
      extended by java.util.AbstractList<E>
          extended by java.util.ArrayList<T>
              extended by org.geworkbench.bison.datastructure.complex.panels.CSItemList<T>
                  extended by org.geworkbench.bison.datastructure.complex.panels.CSSequentialItemList<T>
                      extended by org.geworkbench.bison.datastructure.biocollections.CSDataSet<T>
                          extended by org.geworkbench.bison.datastructure.biocollections.CSAncillaryDataSet<DSMicroarray>
                              extended by org.geworkbench.bison.datastructure.bioobjects.SamResultData
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, java.lang.Iterable<DSMicroarray>, java.util.Collection<DSMicroarray>, java.util.List<DSMicroarray>, java.util.RandomAccess, DSAncillaryDataSet<DSMicroarray>, DSDataSet<DSMicroarray>, DSItemList<DSMicroarray>, DSDescribable, DSExtendable, DSIdentifiable, DSNamed

public class SamResultData
extends CSAncillaryDataSet<DSMicroarray>

Version:
$Id$
Author:
zm2165
See Also:
Serialized Form

Field Summary
 
Fields inherited from class org.geworkbench.bison.datastructure.biocollections.CSDataSet
columnOrder, compatibilityLabel, dataSetProperties, description, experimentInfo, extend, file, label
 
Fields inherited from class java.util.AbstractList
modCount
 
Constructor Summary
SamResultData(DSMicroarraySet maSet, java.lang.String string, DSMicroarraySetView<DSGeneMarker,DSMicroarray> data, float deltaInc, float deltaMax, float[] dd, float[] dbar, float[] pvalue, float[] fold, float[] fdr)
           
 
Method Summary
 float[] getD()
           
 DSMicroarraySetView<DSGeneMarker,DSMicroarray> getData()
           
 float[] getDbar()
           
 float getDeltaInc()
           
 float getDeltaMax()
           
 float[] getFdr()
           
 float[] getFold()
           
 DSMicroarraySet getMaSet()
           
 float[] getPvalue()
           
 
Methods inherited from class org.geworkbench.bison.datastructure.biocollections.CSAncillaryDataSet
getParentDataSet, setParent
 
Methods inherited from class org.geworkbench.bison.datastructure.biocollections.CSDataSet
addNameValuePair, addObject, allowMultipleValues, clearName, forceUniqueValue, getColumnOrder, getCompatibilityLabel, getDataSetName, getDescription, getExperimentInformation, getFile, getID, getLabel, getObject, getValuesForName, isActive, isUniqueValue, setColumnOrder, setDescription, setExperimentInformation, setFile, setID, setLabel, toString, writeToFile
 
Methods inherited from class org.geworkbench.bison.datastructure.complex.panels.CSSequentialItemList
add, add, remove
 
Methods inherited from class org.geworkbench.bison.datastructure.complex.panels.CSItemList
addAll, clear, equals, get, hashCode, set, setLabel
 
Methods inherited from class java.util.ArrayList
addAll, clone, contains, ensureCapacity, get, indexOf, isEmpty, lastIndexOf, remove, removeRange, size, toArray, toArray, trimToSize
 
Methods inherited from class java.util.AbstractList
iterator, listIterator, listIterator, subList
 
Methods inherited from class java.util.AbstractCollection
containsAll, removeAll, retainAll
 
Methods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface org.geworkbench.bison.datastructure.biocollections.DSDataSet
addObject, getColumnOrder, getCompatibilityLabel, getDataSetName, getExperimentInformation, getFile, getObject, isActive, setColumnOrder, setExperimentInformation, setFile, writeToFile
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSDescribable
getDescription, setDescription
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSNamed
getLabel, setLabel
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSExtendable
addNameValuePair, allowMultipleValues, clearName, forceUniqueValue, getValuesForName, isUniqueValue
 
Methods inherited from interface org.geworkbench.bison.datastructure.complex.panels.DSItemList
get
 
Methods inherited from interface java.util.List
add, add, addAll, addAll, clear, contains, containsAll, equals, get, hashCode, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, size, subList, toArray, toArray
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSIdentifiable
getID, setID
 

Constructor Detail

SamResultData

public SamResultData(DSMicroarraySet maSet,
                     java.lang.String string,
                     DSMicroarraySetView<DSGeneMarker,DSMicroarray> data,
                     float deltaInc,
                     float deltaMax,
                     float[] dd,
                     float[] dbar,
                     float[] pvalue,
                     float[] fold,
                     float[] fdr)
Method Detail

getMaSet

public DSMicroarraySet getMaSet()

getData

public DSMicroarraySetView<DSGeneMarker,DSMicroarray> getData()

getDeltaInc

public float getDeltaInc()

getDeltaMax

public float getDeltaMax()

getD

public float[] getD()

getDbar

public float[] getDbar()

getPvalue

public float[] getPvalue()

getFold

public float[] getFold()

getFdr

public float[] getFdr()