org.geworkbench.bison.datastructure.bioobjects.microarray
Interface DSAnovaResultSet<T extends DSGeneMarker>

All Superinterfaces:
java.util.Collection<DSMicroarray>, DSAncillaryDataSet<DSMicroarray>, DSDataSet<DSMicroarray>, DSDescribable, DSExtendable, DSIdentifiable, DSItemList<DSMicroarray>, DSNamed, DSSignificanceResultSet<T>, java.lang.Iterable<DSMicroarray>, java.util.List<DSMicroarray>, java.io.Serializable
All Known Implementing Classes:
CSAnovaResultSet

public interface DSAnovaResultSet<T extends DSGeneMarker>
extends DSSignificanceResultSet<T>

Version:
$Id: DSAnovaResultSet.java 7411 2011-02-04 20:28:55Z zji $
Author:
yc2480

Field Summary
 
Fields inherited from interface org.geworkbench.bison.datastructure.bioobjects.microarray.DSSignificanceResultSet
CASE, CONTROL
 
Method Summary
 double getAdjPValue(T marker)
           
 double getDeviation(T marker, java.lang.String label)
           
 double getFStatistic(T marker)
           
 double getMean(T marker, java.lang.String label)
           
 double getPValue(T marker)
           
 double[][] getResult2DArray()
           
 void microarraySetViewSetter(DSMicroarraySetView<? extends DSGeneMarker,? extends DSMicroarray> view)
           
 void saveToFile(java.lang.String filename)
           
 java.lang.String[] significantMarkerNamesGetter()
           
 
Methods inherited from interface org.geworkbench.bison.datastructure.bioobjects.microarray.DSSignificanceResultSet
addSigGenToPanel, getCriticalPValue, getFoldChange, getIsLogNormalized, getLabels, getParentDataSet, getSignificance, getSignificantMarkers, getTValue, saveDataToCSVFile, setFoldChange, setMarker, setSignificance, setTValue, sortMarkersBySignificance
 
Methods inherited from interface org.geworkbench.bison.datastructure.biocollections.DSDataSet
addObject, getColumnOrder, getCompatibilityLabel, getDataSetName, getExperimentInformation, getFile, getObject, isActive, setColumnOrder, setExperimentInformation, setFile, writeToFile
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSDescribable
getDescription, setDescription
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSNamed
getLabel, setLabel
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSExtendable
addNameValuePair, allowMultipleValues, clearName, forceUniqueValue, getValuesForName, isUniqueValue
 
Methods inherited from interface org.geworkbench.bison.datastructure.complex.panels.DSItemList
get
 
Methods inherited from interface java.util.List
add, add, addAll, addAll, clear, contains, containsAll, equals, get, hashCode, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, size, subList, toArray, toArray
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSIdentifiable
getID, setID
 

Method Detail

getResult2DArray

double[][] getResult2DArray()

getPValue

double getPValue(T marker)

getAdjPValue

double getAdjPValue(T marker)

getFStatistic

double getFStatistic(T marker)

getMean

double getMean(T marker,
               java.lang.String label)

getDeviation

double getDeviation(T marker,
                    java.lang.String label)

saveToFile

void saveToFile(java.lang.String filename)

microarraySetViewSetter

void microarraySetViewSetter(DSMicroarraySetView<? extends DSGeneMarker,? extends DSMicroarray> view)

significantMarkerNamesGetter

java.lang.String[] significantMarkerNamesGetter()