org.geworkbench.bison.datastructure.bioobjects.microarray
Interface DSGenotypicMarkerValue

All Superinterfaces:

java.lang.Comparable, DSMarkerValue, DSMutableMarkerValue, java.io.Serializable

All Known Implementing Classes:

CSGenotypicMarkerValue

public interface DSGenotypicMarkerValue
extends DSMutableMarkerValue

Method Summary

short	getAllele(int id) Gets either of the two alleles
void	setAllele(int allele) Sets the primary allele
void	setGenotype(int allele0, int allele1) Sets genotype

Methods inherited from interface org.geworkbench.bison.datastructure.bioobjects.microarray.DSMutableMarkerValue

mask, setConfidence, setMissing, setValue, unmask

Methods inherited from interface org.geworkbench.bison.datastructure.bioobjects.microarray.DSMarkerValue

deepCopy, equals, getConfidence, getDimensionality, getValue, isMasked, isMissing, isValid

Methods inherited from interface java.lang.Comparable

compareTo

Method Detail

getAllele

short getAllele(int id)

Gets either of the two alleles

Parameters:

id - int either of the two dimensions

Returns:

int allele as int

setAllele

void setAllele(int allele)

Sets the primary allele

Parameters:

allele - int

setGenotype

void setGenotype(int allele0,
                 int allele1)

Sets genotype

Parameters:

allele0 - int

allele1 - int