org.geworkbench.bison.datastructure.bioobjects.sequence
Interface DSAlignmentResultSet

All Superinterfaces:
java.lang.Cloneable, java.util.Collection<DSBioObject>, DSAncillaryDataSet<DSBioObject>, DSDataSet<DSBioObject>, DSDescribable, DSExtendable, DSIdentifiable, DSItemList<DSBioObject>, DSNamed, java.lang.Iterable<DSBioObject>, java.util.List<DSBioObject>, java.util.RandomAccess, java.io.Serializable
All Known Implementing Classes:
CSAlignmentResultSet

public interface DSAlignmentResultSet
extends java.util.RandomAccess, java.lang.Cloneable, DSAncillaryDataSet<DSBioObject>, java.io.Serializable

Version:
$Id: DSAlignmentResultSet.java 9969 2012-10-03 21:22:41Z zji $
Author:
John Watkinson

Method Summary
 java.util.List<java.util.Vector<BlastObj>> getBlastDataSet()
           
 DSSequenceSet<? extends DSSequence> getBlastedParentDataSet()
           
 int getHitCount()
           
 java.lang.String getSummary()
           
 
Methods inherited from interface org.geworkbench.bison.datastructure.biocollections.DSAncillaryDataSet
getParentDataSet
 
Methods inherited from interface org.geworkbench.bison.datastructure.biocollections.DSDataSet
addObject, getColumnOrder, getCompatibilityLabel, getDataSetName, getExperimentInformation, getFile, getObject, isActive, setColumnOrder, setExperimentInformation, setFile, writeToFile
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSDescribable
getDescription, setDescription
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSNamed
getLabel, setLabel
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSExtendable
addNameValuePair, allowMultipleValues, clearName, forceUniqueValue, getValuesForName, isUniqueValue
 
Methods inherited from interface org.geworkbench.bison.datastructure.complex.panels.DSItemList
get
 
Methods inherited from interface java.util.List
add, add, addAll, addAll, clear, contains, containsAll, equals, get, hashCode, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, size, subList, toArray, toArray
 
Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSIdentifiable
getID, setID
 

Method Detail

getBlastedParentDataSet

DSSequenceSet<? extends DSSequence> getBlastedParentDataSet()

getBlastDataSet

java.util.List<java.util.Vector<BlastObj>> getBlastDataSet()

getSummary

java.lang.String getSummary()

getHitCount

int getHitCount()