org.geworkbench.bison.datastructure.complex.pattern
Class CSMatchedPattern<T extends DSSequential,R>

java.lang.Object
  org.geworkbench.bison.datastructure.complex.pattern.CSMatchedPattern<T,R>

All Implemented Interfaces:

DSMatchedPattern<T,R>, DSNamed, DSPValue

Direct Known Subclasses:

CSMatchedMatrixPattern, CSMatchedSeqPattern

public class CSMatchedPattern<T extends DSSequential,R>
extends java.lang.Object
implements DSMatchedPattern<T,R>

Title: Bioworks

Description: Modular Application Framework for Gene Expession, Sequence and Genotype Analysis

Copyright: Copyright (c) 2003 -2004

Company: Columbia University

Version:

1.0

Author:

not attributable

Field Summary

protected java.util.List<DSPatternMatch<T,R>>	matches
protected DSPattern<T,R>	pattern
protected double	zScore

Constructor Summary

CSMatchedPattern()

CSMatchedPattern(DSPattern<T,R> _pattern)

Method Summary

boolean	add(DSPatternMatch<T,R> match)
void	addAll(DSMatchedPattern<T,R> matches)
boolean	containsObject(T object)
boolean	containsSupport(CSMatchedPattern<T,R> pat)
DSPatternMatch<T,R>	get(int i)
java.lang.String	getLabel() Gets the label for this object.
DSPattern<T,R>	getPattern()
double	getPValue()
int	getSupport()
int	getUniqueSupport()
java.util.List<DSPatternMatch<T,R>>	matches()
void	setLabel(java.lang.String label) Sets the label for this object.
void	setPValue(double pValue)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

matches

protected java.util.List<DSPatternMatch<T extends DSSequential,R>> matches

pattern

protected DSPattern<T extends DSSequential,R> pattern

zScore

protected double zScore

Constructor Detail

CSMatchedPattern

public CSMatchedPattern(DSPattern<T,R> _pattern)

CSMatchedPattern

public CSMatchedPattern()

Method Detail

getPattern

public DSPattern<T,R> getPattern()

Specified by:

getPattern in interface DSMatchedPattern<T extends DSSequential,R>

add

public boolean add(DSPatternMatch<T,R> match)

Specified by:

add in interface DSMatchedPattern<T extends DSSequential,R>

matches

public java.util.List<DSPatternMatch<T,R>> matches()

Specified by:

matches in interface DSMatchedPattern<T extends DSSequential,R>

containsObject

public boolean containsObject(T object)

containsSupport

public boolean containsSupport(CSMatchedPattern<T,R> pat)

getPValue

public double getPValue()

Specified by:

getPValue in interface DSPValue

setPValue

public void setPValue(double pValue)

Specified by:

setPValue in interface DSPValue

getSupport

public int getSupport()

Specified by:

getSupport in interface DSMatchedPattern<T extends DSSequential,R>

getUniqueSupport

public int getUniqueSupport()

Specified by:

getUniqueSupport in interface DSMatchedPattern<T extends DSSequential,R>

get

public DSPatternMatch<T,R> get(int i)

Specified by:

get in interface DSMatchedPattern<T extends DSSequential,R>

addAll

public void addAll(DSMatchedPattern<T,R> matches)

Specified by:

addAll in interface DSMatchedPattern<T extends DSSequential,R>

setLabel

public void setLabel(java.lang.String label)

Description copied from interface: DSNamed

Sets the label for this object.

Specified by:

setLabel in interface DSNamed

Parameters:

label - the new label for this object.

getLabel

public java.lang.String getLabel()

Description copied from interface: DSNamed

Gets the label for this object.

Specified by:

getLabel in interface DSNamed

Returns:

the label.