org.geworkbench.bison.datastructure.complex.pattern.matrix
Class CSPSAMRegistration

java.lang.Object
  extended by org.geworkbench.bison.datastructure.complex.pattern.sequence.CSSeqRegistration
      extended by org.geworkbench.bison.datastructure.complex.pattern.matrix.CSPSAMRegistration
All Implemented Interfaces:
DSPValue

public class CSPSAMRegistration
extends CSSeqRegistration

Author:
manjunath at genomecenter dot columbia dot edu

Nested Class Summary
static class CSPSAMRegistration.Organism
           
 
Field Summary
 java.lang.String assembly
           
 java.lang.String chromosome
           
 CSPSAMRegistration.Organism organism
           
 
Fields inherited from class org.geworkbench.bison.datastructure.complex.pattern.sequence.CSSeqRegistration
pValue, strand, x1, x2
 
Constructor Summary
CSPSAMRegistration(CSPSAMRegistration.Organism org, java.lang.String a, java.lang.String chr, int x1, int x2, int s, float pv)
          Creates a new instance of CSPSAMRegistration
 
Method Summary
 
Methods inherited from class org.geworkbench.bison.datastructure.complex.pattern.sequence.CSSeqRegistration
getPValue, length, setPValue
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

organism

public CSPSAMRegistration.Organism organism

assembly

public java.lang.String assembly

chromosome

public java.lang.String chromosome
Constructor Detail

CSPSAMRegistration

public CSPSAMRegistration(CSPSAMRegistration.Organism org,
                          java.lang.String a,
                          java.lang.String chr,
                          int x1,
                          int x2,
                          int s,
                          float pv)
Creates a new instance of CSPSAMRegistration