org.geworkbench.bison.datastructure.complex.pattern.matrix
Class CSPSAMRegistration

java.lang.Object
  org.geworkbench.bison.datastructure.complex.pattern.sequence.CSSeqRegistration
      org.geworkbench.bison.datastructure.complex.pattern.matrix.CSPSAMRegistration

All Implemented Interfaces:

DSPValue

public class CSPSAMRegistration
extends CSSeqRegistration

Author:

manjunath at genomecenter dot columbia dot edu

Nested Class Summary

static class

CSPSAMRegistration.Organism

Field Summary

java.lang.String	assembly
java.lang.String	chromosome
CSPSAMRegistration.Organism	organism

Fields inherited from class org.geworkbench.bison.datastructure.complex.pattern.sequence.CSSeqRegistration

pValue, strand, x1, x2

Constructor Summary

CSPSAMRegistration(CSPSAMRegistration.Organism org, java.lang.String a, java.lang.String chr, int x1, int x2, int s, float pv)
Creates a new instance of CSPSAMRegistration

Method Summary

Methods inherited from class org.geworkbench.bison.datastructure.complex.pattern.sequence.CSSeqRegistration

getPValue, length, setPValue

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

organism

public CSPSAMRegistration.Organism organism

assembly

public java.lang.String assembly

chromosome

public java.lang.String chromosome

Constructor Detail

CSPSAMRegistration

public CSPSAMRegistration(CSPSAMRegistration.Organism org,
                          java.lang.String a,
                          java.lang.String chr,
                          int x1,
                          int x2,
                          int s,
                          float pv)

Creates a new instance of CSPSAMRegistration