org.geworkbench.bison.datastructure.complex.pattern.matrix
Interface DSMatrixReduceSet

All Superinterfaces:

java.util.Collection<DSPositionSpecificAffintyMatrix>, DSAncillaryDataSet<DSPositionSpecificAffintyMatrix>, DSDataSet<DSPositionSpecificAffintyMatrix>, DSDescribable, DSExtendable, DSIdentifiable, DSItemList<DSPositionSpecificAffintyMatrix>, DSNamed, java.lang.Iterable<DSPositionSpecificAffintyMatrix>, java.util.List<DSPositionSpecificAffintyMatrix>, java.io.Serializable

All Known Implementing Classes:

CSMatrixReduceSet

public interface DSMatrixReduceSet
extends DSAncillaryDataSet<DSPositionSpecificAffintyMatrix>

Author:

John Watkinson, ch2514

Method Summary

org.apache.commons.collections15.map.ListOrderedMap<java.lang.String,java.util.List<DSMatrixReduceExperiment>>	getMatrixReduceExperiments()
java.lang.String	getRunLog()
org.apache.commons.collections15.map.ListOrderedMap<java.lang.String,java.lang.String>	getSequences()
void	setMatrixReduceExperiments(org.apache.commons.collections15.map.ListOrderedMap<java.lang.String,java.util.List<DSMatrixReduceExperiment>> experiments)
void	setRunLog(java.lang.String runlog)
void	setSequences(org.apache.commons.collections15.map.ListOrderedMap<java.lang.String,java.lang.String> sequences)

Methods inherited from interface org.geworkbench.bison.datastructure.biocollections.DSAncillaryDataSet

getDataSetFile, getParentDataSet, setDataSetFile

Methods inherited from interface org.geworkbench.bison.datastructure.biocollections.DSDataSet

addObject, getCompatibilityLabel, getDataSetName, getExperimentInformation, getFile, getObject, getPath, isActive, readFromResource, removeResource, setAbsPath, setExperimentInformation, setFile, setResource, writeToFile, writeToResource

Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSDescribable

addDescription, getDescriptions, removeDescription

Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSNamed

getLabel, setLabel

Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSExtendable

addNameValuePair, allowMultipleValues, clearName, forceUniqueValue, getValuesForName, isUniqueValue

Methods inherited from interface org.geworkbench.bison.datastructure.complex.panels.DSItemList

get, get, rename

Methods inherited from interface java.util.List

add, add, addAll, addAll, clear, contains, containsAll, equals, get, hashCode, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, size, subList, toArray, toArray

Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSIdentifiable

getID, setID

Method Detail

getSequences

org.apache.commons.collections15.map.ListOrderedMap<java.lang.String,java.lang.String> getSequences()

getMatrixReduceExperiments

org.apache.commons.collections15.map.ListOrderedMap<java.lang.String,java.util.List<DSMatrixReduceExperiment>> getMatrixReduceExperiments()

setSequences

void setSequences(org.apache.commons.collections15.map.ListOrderedMap<java.lang.String,java.lang.String> sequences)

setMatrixReduceExperiments

void setMatrixReduceExperiments(org.apache.commons.collections15.map.ListOrderedMap<java.lang.String,java.util.List<DSMatrixReduceExperiment>> experiments)

setRunLog

void setRunLog(java.lang.String runlog)

getRunLog

java.lang.String getRunLog()