org.geworkbench.util.pathwaydecoder.mutualinformation
Class EdgeListDataSet

java.lang.Object
  java.util.AbstractCollection<E>
      java.util.AbstractList<E>
          java.util.ArrayList<T>
              org.geworkbench.bison.datastructure.complex.panels.CSItemList<T>
                  org.geworkbench.bison.datastructure.complex.panels.CSSequentialItemList<T>
                      org.geworkbench.bison.datastructure.biocollections.CSDataSet<T>
                          org.geworkbench.bison.datastructure.biocollections.CSAncillaryDataSet
                              org.geworkbench.util.pathwaydecoder.mutualinformation.EdgeListDataSet

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, java.lang.Iterable, java.util.Collection, java.util.List, java.util.RandomAccess, DSAncillaryDataSet, DSDataSet, DSItemList, DSDescribable, DSExtendable, DSIdentifiable, DSNamed

public class EdgeListDataSet
extends CSAncillaryDataSet
implements DSAncillaryDataSet

See Also:

Serialized Form

Field Summary

Fields inherited from class org.geworkbench.bison.datastructure.biocollections.CSDataSet

absPath, arraySetId, compatibilityLabel, dataSetProperties, descriptions, dirty, experimentInfo, extend, file, label, maResource

Fields inherited from class org.geworkbench.bison.datastructure.complex.panels.CSItemList

objectMap

Fields inherited from class java.util.AbstractList

modCount

Constructor Summary

EdgeListDataSet(java.lang.String label, EdgeList data, java.lang.String filename)

Method Summary

EdgeList	getData()
java.io.File	getDataSetFile() Gets the data set file.
java.lang.String	getFilename()
void	setData(EdgeList data)
void	setDataSetFile(java.io.File file) Sets the data set file.
void	setFilename(java.lang.String filename)
void	writeToFile(java.lang.String fileName) Writes the data set to the provided filename.

Methods inherited from class org.geworkbench.bison.datastructure.biocollections.CSAncillaryDataSet

getParentDataSet, setParent

Methods inherited from class org.geworkbench.bison.datastructure.biocollections.CSDataSet

addDescription, addNameValuePair, addObject, allowMultipleValues, clearName, forceUniqueValue, getCompatibilityLabel, getDataSetName, getDescriptions, getExperimentInformation, getFile, getID, getLabel, getObject, getPath, getValuesForName, isActive, isDirty, isUniqueValue, readFromResource, removeDescription, removeResource, setAbsPath, setDirty, setExperimentInformation, setFile, setID, setLabel, setResource, toString, writeToResource

Methods inherited from class org.geworkbench.bison.datastructure.complex.panels.CSSequentialItemList

add, add, remove

Methods inherited from class org.geworkbench.bison.datastructure.complex.panels.CSItemList

addAll, clear, equals, get, get, hashCode, rename

Methods inherited from class java.util.ArrayList

addAll, clone, contains, ensureCapacity, get, indexOf, isEmpty, lastIndexOf, remove, removeRange, set, size, toArray, toArray, trimToSize

Methods inherited from class java.util.AbstractList

iterator, listIterator, listIterator, subList

Methods inherited from class java.util.AbstractCollection

containsAll, removeAll, retainAll

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.geworkbench.bison.datastructure.biocollections.DSAncillaryDataSet

getParentDataSet

Methods inherited from interface org.geworkbench.bison.datastructure.biocollections.DSDataSet

addObject, getCompatibilityLabel, getDataSetName, getExperimentInformation, getFile, getObject, getPath, isActive, readFromResource, removeResource, setAbsPath, setExperimentInformation, setFile, setResource, writeToResource

Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSDescribable

addDescription, getDescriptions, removeDescription

Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSNamed

getLabel, setLabel

Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSExtendable

addNameValuePair, allowMultipleValues, clearName, forceUniqueValue, getValuesForName, isUniqueValue

Methods inherited from interface org.geworkbench.bison.datastructure.complex.panels.DSItemList

get, get, rename

Methods inherited from interface java.util.List

add, add, addAll, addAll, clear, contains, containsAll, equals, get, hashCode, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, size, subList, toArray, toArray

Methods inherited from interface org.geworkbench.bison.datastructure.properties.DSIdentifiable

getID, setID

Constructor Detail

EdgeListDataSet

public EdgeListDataSet(java.lang.String label,
                       EdgeList data,
                       java.lang.String filename)

Method Detail

getDataSetFile

public java.io.File getDataSetFile()

Description copied from interface: DSAncillaryDataSet

Gets the data set file.

Specified by:

getDataSetFile in interface DSAncillaryDataSet

Returns:

setDataSetFile

public void setDataSetFile(java.io.File file)

Description copied from interface: DSAncillaryDataSet

Sets the data set file.

Specified by:

setDataSetFile in interface DSAncillaryDataSet

Parameters:

file - the file to associate with this data set.

getData

public EdgeList getData()

setData

public void setData(EdgeList data)

getFilename

public java.lang.String getFilename()

setFilename

public void setFilename(java.lang.String filename)

writeToFile

public void writeToFile(java.lang.String fileName)

Description copied from interface: DSDataSet

Writes the data set to the provided filename.

Specified by:

writeToFile in interface DSDataSet

Overrides:

writeToFile in class CSDataSet

Parameters:

fileName - the filename (path) to which to write this file.