org.geworkbench.util.sequences
Class SequenceViewWidgetPanel

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  org.geworkbench.util.sequences.SequenceViewWidgetPanel

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible

public class SequenceViewWidgetPanel
extends javax.swing.JPanel

Title:

Description:

Copyright: Copyright (c) 2003

Company:

Version:

1.0

Author:

not attributable

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

static java.awt.Color

DRECTIONCOLOR

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

SequenceViewWidgetPanel()

Method Summary

void	addMenuItem(javax.swing.JMenuItem item)
ImageSnapshotEvent	createImageSnapshot()
void	flipLineView()
java.lang.String	getDisplayInfo()
int	getMaxSeqLen()
DSSequence	getSelectedSequence()
int	getSeqId(int y)
int	getSeqXclickPoint()
void	initialize() initialize
void	initialize(java.util.HashMap<CSSequence,PatternSequenceDisplayUtil> patternSeqMatches, DSSequenceSet<? extends DSSequence> seqDB, boolean isLineView) New Initialization method.
boolean	islineView()
void	paintComponent(java.awt.Graphics g)
void	setDisplayInfo(java.lang.String displayInfo)
void	setlineView(boolean lineView)
void	setMaxSeqLen(int maxSeqLen)
void	setMouseMoveParameters(java.awt.event.MouseEvent e) Set up the coresponding parameters when mouse moves.
void	setSelectedSequence(DSSequence selectedSequence)
void	setSeqXclickPoint(int seqXclickPoint)
void	setShowAll(boolean all)
void	setTranslatedParameters(java.awt.event.MouseEvent e) Set up coresponding parameters when a mouse click happens.
void	this_mouseClicked(java.awt.event.MouseEvent e) Handle Mouse clicks.
void	this_mouseMoved(java.awt.event.MouseEvent e)

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

DRECTIONCOLOR

public static final java.awt.Color DRECTIONCOLOR

Constructor Detail

SequenceViewWidgetPanel

public SequenceViewWidgetPanel()

Method Detail

addMenuItem

public void addMenuItem(javax.swing.JMenuItem item)

createImageSnapshot

public ImageSnapshotEvent createImageSnapshot()

initialize

public void initialize(java.util.HashMap<CSSequence,PatternSequenceDisplayUtil> patternSeqMatches,
                       DSSequenceSet<? extends DSSequence> seqDB,
                       boolean isLineView)

New Initialization method. It should be used as a main entry point. Others initialization method should be disabled or replaced.

Parameters:

patternSeqMatches - HashMap

seqDB - DSSequenceSet

isLineView - boolean

paintComponent

public void paintComponent(java.awt.Graphics g)

Overrides:

paintComponent in class javax.swing.JComponent

setShowAll

public void setShowAll(boolean all)

setMaxSeqLen

public void setMaxSeqLen(int maxSeqLen)

setlineView

public void setlineView(boolean lineView)

setDisplayInfo

public void setDisplayInfo(java.lang.String displayInfo)

setSeqXclickPoint

public void setSeqXclickPoint(int seqXclickPoint)

setSelectedSequence

public void setSelectedSequence(DSSequence selectedSequence)

getMaxSeqLen

public int getMaxSeqLen()

islineView

public boolean islineView()

getDisplayInfo

public java.lang.String getDisplayInfo()

getSeqXclickPoint

public int getSeqXclickPoint()

getSelectedSequence

public DSSequence getSelectedSequence()

this_mouseClicked

public void this_mouseClicked(java.awt.event.MouseEvent e)

Handle Mouse clicks.

Parameters:

e - MouseEvent

setMouseMoveParameters

public void setMouseMoveParameters(java.awt.event.MouseEvent e)

Set up the coresponding parameters when mouse moves.

Parameters:

e - MouseEvent

setTranslatedParameters

public void setTranslatedParameters(java.awt.event.MouseEvent e)

Set up coresponding parameters when a mouse click happens.

Parameters:

e - MouseEvent

flipLineView

public void flipLineView()

getSeqId

public int getSeqId(int y)

this_mouseMoved

public void this_mouseMoved(java.awt.event.MouseEvent e)

initialize

public void initialize()

initialize