Analysis Framework - Revision history

Smith at 16:48, 15 October 2013

2013-10-15T16:48:25Z

2013-10-15T16:46:42Z

‎Freestanding Analysis Components

2013-10-15T16:46:14Z

‎Analysis Components Menu

2013-10-15T16:34:42Z

‎Layout of analysis components

2013-10-15T16:28:59Z

‎Overview

2013-10-15T16:27:29Z

‎Layout of analysis components (as of geWorkbench 2.3.0)

2013-10-15T16:27:09Z

‎Layout of analysis components (as of geWorkbench 2.3.0)

2013-10-15T16:25:40Z

‎Creating saved parameter sets (as of geWorkbench 2.3.0)

2013-10-15T16:25:17Z

2013-07-16T18:44:01Z

‎Layout of analysis components (as of geWorkbench 2.3.0)

@@ Line 17: / Line 17: @@
 [[Image:ANOVA_Parameters_25.png]]
 ==Analysis Actions==
 ===Analyze===
 Launches the currently selected analysis with the specified parameters.
 ===Save Settings===
 Save the current parameter settings to a named set in the settings list.
 ===Delete Settings===
 Delete the currently highlighted settings entry from the list.
 ==Creating saved parameter sets==
@@ Line 57: / Line 51: @@
 ** the user hits "Enter" in the changed text field or another text field in that component, or
 ** the user clicks on a control such as a radio button that changes another parameter in the component.

@@ Line 19: / Line 19: @@
 ==Freestanding Analysis Components==
-Some complex analysis functions, such as BLAST, Promoter, and Pattern Discovery are not started from the Analysis menu.  Instead, if they have been loaded in the CCM, they are found directly in the Visual Area at upper right in geWorkbench (when an appropriate data node is selected, e.g. a sequence file).
+Some complex analysis functions, such as BLAST, Promoter, and Pattern Discovery are not started from the Analysis menu.  Instead, if they have been loaded in the CCM, they are found directly in the Visual Area at upper right in geWorkbench (when an appropriate data node is selected, e.g. a sequence file for the three just mentioned).
 ==Analysis Actions==

@@ Line 2: / Line 2: @@
 ==Analysis Components Menu==
 Most analysis actions are activated in one of two ways.
 # Right-click on a data node
@@ Line 19: / Line 18: @@
 Some complex analysis functions, such as BLAST, Promoter, and Pattern Discovery are not started from the Analysis menu.  Instead, if they have been loaded in the CCM, they are found directly in the Visual Area at upper right in geWorkbench (when an appropriate data node is selected, e.g. a sequence file).

@@ Line 1: / Line 1: @@
 {{TutorialsTopNav}}
-==Layout of analysis components==
+==Analysis Components Menu==
-Analysis actions are activated in one of two ways.
+Most analysis actions are activated in one of two ways.
 # Right-click on a data node
 # In the top Menu Bar, select Commands->Analysis
@@ Line 13: / Line 13: @@
-Selecting a component will cause its analysis control dialog to appear.  All components share a common framework, but each also has its own controls and parameters.  The below figure shows the ANOVA analysis dialog.
+Selecting a component will cause its analysis control dialog to appear.  The components share a common framework, but each also has its own controls and parameters.  The below figure shows the ANOVA analysis dialog.
 [[Image:ANOVA_Parameters_25.png]]
 ==Analysis Actions==

← Older revision		Revision as of 16:28, 15 October 2013
Line 1:		Line 1:
	{{TutorialsTopNav}}		{{TutorialsTopNav}}
−
−	~~==Overview==~~
−
−	~~Most analysis routines are located in the command area in the lower right quadrant of geWorkbench. There they share a common framework and a common method for saving parameter settings.~~

	==Layout of analysis components==		==Layout of analysis components==

@@ Line 5: / Line 5: @@
 Most analysis routines are located in the command area in the lower right quadrant of geWorkbench.  There they share a common framework and a common method for saving parameter settings.
-==Layout of analysis components (as of geWorkbench 2.3.0)==
+==Layout of analysis components==
 Analysis actions are activated in one of two ways.

@@ Line 14: / Line 14: @@
-[[Image:Project_Folders_Analysis_ANOVA.png]]
+[[Image:Workspace_Analysis_ANOVA_v25.png]]
@@ Line 20: / Line 20: @@
-[[Image:ANOVA_Parameters_w.png]]
+[[Image:ANOVA_Parameters_25.png]]
 ==Analysis Actions==

@@ Line 39: / Line 39: @@
-==Creating saved parameter sets (as of geWorkbench 2.3.0)==
+==Creating saved parameter sets==
 The current parameter settings can be saved by pushing the '''Save Settings''' button.  A dialog will appear asking for a name for the new set of saved parameters.
@@ Line 52: / Line 52: @@
 If any parameters are then changed, the entry "Initial Settings" will no longer be selected in the list.  However, if it is chosen again, its saved parameter settings will be restored.
 ==Interplay of parameters and list==

← Older revision		Revision as of 18:44, 16 July 2013
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	# In the top Menu Bar, select Commands->Analysis		# In the top Menu Bar, select Commands->Analysis

−	Either method will bring up a list of the currently loaded analysis components. Additional components may be available in the [[Component_Configuration_Manager\|\|Component Configuration Manager]].	+	Either method will bring up a list of the currently loaded analysis components. Additional components may be available in the [[Component_Configuration_Manager\|Component Configuration Manager]].