Annotation Dependencies - Revision history

Smith at 21:04, 18 June 2010

2010-06-18T21:04:17Z

2010-06-18T21:02:41Z

2010-06-18T20:52:14Z

2010-06-18T20:36:49Z

2010-06-18T20:33:32Z

2010-06-18T20:33:10Z

2010-06-18T20:32:37Z

2010-06-18T20:29:58Z

2010-06-18T20:28:49Z

New page

{| border="1" cellpadding="5" cellspacing="0" style="margin:10px;"
|-style="color:black;background-color:#AAFFAA;"
!Component
!Columns required
}

@@ Line 1: / Line 1: @@
 geWorkbench currently can only read in annotation files based on the Affymetrix annotation file format.  Following is a list of the column headers for data types required by various geWorkbench components.
@@ Line 31: / Line 33: @@
-All Affy headers:
+==List of All Affy headers==
 * Probe Set ID

@@ Line 1: / Line 1: @@
 geWorkbench currently can only read in annotation files based on the Affymetrix annotation file format.  Following is a list of the column headers for data types required by various geWorkbench components.
-All components require "Probe Set ID".
+* All components require "'''Probe Set ID'''".
 {| border="1" cellpadding="5" cellspacing="0" style="margin:10px;"

@@ Line 1: / Line 1: @@
-geWorkbench currently can only read in annotation files based on the Affymetrix annotation file format.  Following is a list of the column headers for data types required by various geWorkbench components.
+All components require "Probe Set ID".
 {| border="1" cellpadding="5" cellspacing="0" style="margin:10px;"
@@ Line 9: / Line 10: @@
 |-
 |CNKB
-|EntrezID
+|Entrez Gene
 |-
 |Gene Ontology
+|Gene Ontology Biological Process, Gene Ontology Cellular Component, Gene Ontology Molecular Function
 |-
@@ Line 28: / Line 29: @@
 |}

← Older revision		Revision as of 20:36, 18 June 2010
Line 1:		Line 1:
		+
		+	geWorkbench currently can only read in annotation files based on the Affymetrix annotation file format. Following is a list of the column headers for data types required by various geWorkbench components.
		+
	{\| border="1" cellpadding="5" cellspacing="0" style="margin:10px;"		{\| border="1" cellpadding="5" cellspacing="0" style="margin:10px;"
	\|-style="color:black;background-color:#AAFFAA;"		\|-style="color:black;background-color:#AAFFAA;"

@@ Line 1: / Line 1: @@
 {| border="1" cellpadding="5" cellspacing="0" style="margin:10px;"
 |-style="color:black;background-color:#AAFFAA;"
@@ Line 7: / Line 6: @@
 |-
 |CNKB
+|EntrezID
 |-

@@ Line 1: / Line 1: @@
 {| border="1" cellpadding="5" cellspacing="0" style="margin:10px;"
@@ Line 6: / Line 5: @@
 !Columns required
 |CNKB
+|
 |Gene Ontology
+|
 |Marker Annotations
+|
 |Sequence Retrieval (EBI)
+|
 |Sequence Retrieval (Santa Cruz)
+|
 |}

@@ Line 6: / Line 6: @@
 !Component
 !Columns required
+|}