GeWorkbench-web/Cellular Networks KnowledgeBase - Revision history

Smith: moved Cellular Networks KnowledgeBase web to GeWorkbench-web/Cellular Networks KnowledgeBase

2015-04-27T17:58:45Z

2015-03-27T22:31:42Z

2015-03-17T22:29:22Z

‎Usage

2015-03-17T22:28:56Z

‎Throttle Graph

2015-03-17T22:28:19Z

‎The CNKB Results Viewer

2015-03-17T22:27:21Z

‎Throttle Graph

2015-03-17T22:26:57Z

‎GO Annotation

2015-03-17T22:25:48Z

‎Example Query

2015-03-17T22:24:28Z

2015-03-17T22:21:52Z

‎Cytoscape Display of Network

← Older revision		Revision as of 22:31, 27 March 2015
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−	{{~~TutorialsTopNav~~}}	+	{{Template:GeWorkbench-webTutorialsTopNav}}

	=Overview=		=Overview=

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-[[Image:CNKB_web_GUI_with_description.png]]
+[[Image:CNKB_web_GUI_with_description.png|{{ImageMaxWidth}}]]
 A query against the CNKB database is initiated by clicking on the "Submit" button.  All pairwise interactions in the chosen interactome/version that involve any marker in the "Selected Marker Sets" are retrieved.
 ==Details==

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 Here, the cutoff has been increased to a value of 0.90, and the cursor hovered at the point 0.91, with hover text showing the count of interactions remaining beyond that point.  As the cursor is moved further to the right, the number of interactions remaining will decrease.
-[[Image:CNKB_web_throttle_0.9_hover.png]]
+[[Image:CNKB_web_throttle_0.9_hover.png|{{ImageMaxWidth}}]]
 ==Controls==

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 The query results for the two genes are shown below.  The threshold has been increased from 0.0 to 0.7 to show the detail of the lines more clearly.  Increasing the threshold decreases the number of hits displayed in each cell of the tabular listing - only hits at or above the threshold value are displayed.
-[[Image:CNKB_web_throttle_0.7.png]]
+[[Image:CNKB_web_throttle_0.7.png|{{ImageMaxWidth}}]]
@@ Line 126: / Line 126: @@
 ===Export===
 The tabular data is exported to an Excel format (.xls) file in the same format as it is displayed.
 =Cytoscape Display of Network=

@@ Line 114: / Line 114: @@
 Here, the cutoff has been increased to a value of 0.90, and the cursor hovered at the point 0.91, with hover text showing the count of interactions remaining beyond that point.  As the cursor is moved further to the right, the number of interactions remaining will decrease.
-[[Image:CNKB_web_throttle_0.9_hover.png|{{ImageMaxWidth}}]]
+[[Image:CNKB_web_throttle_0.9_hover.png]]
 ==Controls==

← Older revision	Revision as of 17:58, 27 April 2015
(No difference)

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 The Gene Ontology (GO) annotation for the gene, keyed off of GO terms for each marker found in the microarray annotation file.  The term descriptions originate in a copy of the gene ontology file "go-basic.obo" downloaded to the geWorkbench-web server. The column displays the Biological Process annotations, however, there may be many more annotations than can be displayed in the available space.  Hovering the mouse cursor over the field will display the remaining entries.
-[[Image:CNKB_web_hovertext.png|{{ImageMaxWidth}}]]
+[[Image:CNKB_web_hovertext.png]]
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 The number of interactions can be adjusted by changing the threshold using the throttle graph slider control or typing a new value into the threshold text field.
 ==Throttle Graph==

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 * Hit "Submit"
-[[Image:CNKB_web_query_setup.png|{{ImageMaxWidth}}]]
+[[Image:CNKB_web_query_setup.png]]
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 Selecting the CNKB result node displays the results in the CNKB Viewer.
 =The CNKB Results Viewer=

← Older revision		Revision as of 22:21, 17 March 2015
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	A Flash version of Cytoscape is used to display the network.		A Flash version of Cytoscape is used to display the network.

−	[[Image:CNKB_web_cytoscape.png]]	+	[[Image:CNKB_web_cytoscape.png\|{{ImageMaxWidth}}]]