GenomeSpace - Revision history

Smith: /* Launch geWorkbench from the GenomeSpace Portal */

2015-03-06T23:33:11Z

‎Launch geWorkbench from the GenomeSpace Portal

2015-03-06T23:32:14Z

‎Launch geWorkbench from the GenomeSpace Portal

2015-03-06T23:29:48Z

‎Launch geWorkbench from the GenomeSpace Portal

2015-03-06T23:15:00Z

‎The GenomeSpace Portal

2015-03-06T23:12:29Z

‎geWorkbench Launch from GenomeSpace Portal

2015-03-06T23:10:50Z

‎geWorkbench Launch from GenomeSpace Portal

2015-03-06T23:01:39Z

‎geWorkbench Launch from GenomeSpace Portal

2015-03-06T22:48:51Z

‎GenomeSpace in geWorkbench

2015-03-06T22:48:29Z

‎GenomeSpace in geWorkbench

2014-01-22T20:38:19Z

@@ Line 152: / Line 152: @@
 * Check the box "Enable Java content in the browser"
 *Add an exception to allow Java to run for a particular URL.
-* Click "Edit Site List" and then "Add".
+** Click "Edit Site List" and then "Add".
-* Type in the URL for www.columbia.edu.  You can also add the other two for the [[MarkUs]] component if you wish:
+** Type in the URL for www.columbia.edu.  You can also add the other two for the [[MarkUs]] component if you wish:
-** http://www.c2b2.columbia.edu
+*** http://www.c2b2.columbia.edu
-** https://bhapp.c2b2.columbia.edu.
+*** https://bhapp.c2b2.columbia.edu.
-** https://honiglab.c2b2.columbia.edu.
+*** https://honiglab.c2b2.columbia.edu.
 *Then click the "OK" button.

@@ Line 143: / Line 143: @@
 Because Java is subject to increasingly stringent security, you may need to carry out the following steps.
-You must have a Java JRE installed on your computer already.  In your Java Control Panel (in Windows Control Panel, in Mac OS X Settings), go to the Security tab and add an exception for "http://www.c2b2.columbia.edu".
+You must have a Java JRE installed on your computer already.  In your Java Control Panel (in Windows Control Panel, in Mac OS X System Preferences), go to the Security tab and add an exception for "http://www.c2b2.columbia.edu".
 [[Image:Java_Control_Panel.png]]

← Older revision		Revision as of 23:15, 6 March 2015
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−	[[Image:GenomeSpace_Portal.png]]	+	[[Image:GenomeSpace_Portal.png\|{{ImageMaxWidth}}]]

@@ Line 136: / Line 136: @@
 [[Image:GenomeSpace_Uploaded_File.png]]
-==geWorkbench Launch from GenomeSpace Portal==
+==Launch geWorkbench from the GenomeSpace Portal==
 geWorkbench can be launched directly from the GenomeSpace Portal, using Java Web Start.  If geWorkbench is not already installed, you will be prompted to download and install it.

@@ Line 137: / Line 137: @@
 ==geWorkbench Launch from GenomeSpace Portal==
 geWorkbench can be launched directly from the GenomeSpace Portal, using Java Web Start.  If geWorkbench is not already installed, you will be prompted to download and install it.
-Due to increasing security procedures, you may see the following dialogs:
+Note - due to the complexity of the below steps, you can also just install or launch geWorkbench independtly of GenomeSpace.  As soon as you start geWorkbench, the GenomeSpace component will be available for logging in.
-Open the Java Web Start application:
+You must have a Java JRE installed on your computer already.  In your Java Control Panel (in Windows Control Panel, in Mac OS X Settings), go to the Security tab and add an exception for "http://www.c2b2.columbia.edu".

← Older revision		Revision as of 22:48, 6 March 2015
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−	The GenomeSpace component ~~will appear~~ in the Visual area of geWorkbench.	+	The GenomeSpace component appears in the Visual area of geWorkbench.

@@ Line 23: / Line 23: @@
 ==GenomeSpace in geWorkbench==
-To use the GenomeSpace component, it must first be loaded in the [[Component_Configuration_Manager|Component Configuration Manager (CCM)]] by checking the adjacent box and hitting "Apply" and then "Close".
+The GenomeSpace component is now loaded by default in the [[Component_Configuration_Manager|Component Configuration Manager (CCM)]].  If can be unloaded/loaded by checking/unchecking the adjacent box and hitting "Apply" and then "Close".
 [[Image:GenomeSpace_CCM.png]]

← Older revision		Revision as of 20:38, 22 January 2014
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		+	{{TutorialsTopNav}}
		+
	==Overview==		==Overview==
	[http://www.genomespace.org/ GenomeSpace] allows for the transfer of data between a number of different genomics and bioinformatics software analysis platforms, including geWorkbench. GenomeSpace provides a cloud-based portal where data can be shared between these integrated platforms. geWorkbench includes a GenomeSpace component which allows direct upload and download of files to and from GenomeSpace.		[http://www.genomespace.org/ GenomeSpace] allows for the transfer of data between a number of different genomics and bioinformatics software analysis platforms, including geWorkbench. GenomeSpace provides a cloud-based portal where data can be shared between these integrated platforms. geWorkbench includes a GenomeSpace component which allows direct upload and download of files to and from GenomeSpace.