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Smith: /* Mac OSX Example */

2015-01-30T21:49:47Z

‎Mac OSX Example

2015-01-28T00:21:54Z

‎Windows examples

2015-01-27T22:30:33Z

‎R Location (Rscript.exe and its folder)

2015-01-27T22:28:03Z

‎R package directory

2015-01-27T22:24:13Z

‎R package directory

2015-01-27T22:20:05Z

‎R package directory

2015-01-27T22:18:51Z

‎R package directory

2014-11-06T21:06:33Z

‎R package directory

2014-04-22T19:48:20Z

‎Remote Workspaces URL

2014-04-22T19:47:49Z

‎Text Editor

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 ===Mac OSX Example===
-Macintosh OSX users should install R in the usual default directory "Application".  The path to the Rscript location becomes, e.g. for version 3.0: /Library/Frameworks/R.framework/Versions/3.0/Resources/Rscript.
+Macintosh OSX users should install R in the usual default directory "Application".  The path to the Rscript location becomes, e.g. for version 3.1: /Library/Frameworks/R.framework/Versions/3.1/Resources/Rscript.
 [[Image:Mac_OSX_Rscript_location.png]]

@@ Line 75: / Line 75: @@
 ===Windows examples===
-If R is installed to the system directory, the complete entry may appear as shown here (C:\Program Files\R\R-3.0.2\bin\Rscript.exe:
+If R is installed to the system directory, the complete entry may appear as shown here (C:\Program Files\R\R-3.1.2\bin\Rscript.exe:
 [[Image:RScript_location_system.png]]
 ===Mac OSX Example===

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 ==R Location (Rscript.exe and its folder)==
 Several geWorkbench components can make calls to a locally installed version of R.  This field must contain the complete path to the R executable Rscript.exe.
 ===Windows examples===

@@ Line 93: / Line 93: @@
 ==R package directory==
-Intended to hold the path to an alternate R package directory.  If a value is entered here, geWorkbench will download needed R packages to the folder entered.  The folder should already exist.
+Intended to hold the path to an alternate R package directory.  If a value is entered here, geWorkbench will download needed R packages to the folder entered.  The folder should already exist.  This is especially useful if R was installed to a system directory which does not allow direct updates of R packages.
 * Setting a value in this field overrides any value you may have set in the environment variable R_LIBS_USER.
 * The package directory path should not end in a "/" or "\" character.  geWorkbench will remove it if present.

@@ Line 93: / Line 93: @@
 ==R package directory==
-Intended to hold the path to an alternate R package directory, if used.
+Intended to hold the path to an alternate R package directory.  If a value is entered here, geWorkbench will download needed R packages to the folder entered.  The folder should already exist.
 * Setting a value in this field overrides any value you may have set in the environment variable R_LIBS_USER.
 * The package directory path should not end in a "/" or "\" character.  geWorkbench will remove it if present.

← Older revision		Revision as of 22:20, 27 January 2015
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	* Setting a value in this field overrides any value you may have set in the environment variable R_LIBS_USER.		* Setting a value in this field overrides any value you may have set in the environment variable R_LIBS_USER.
		+
		+	* The package directory path should not end in a "/" or "\" character. geWorkbench will remove it if present.

← Older revision		Revision as of 22:18, 27 January 2015
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	Intended to hold the path to an alternate R package directory, if used.		Intended to hold the path to an alternate R package directory, if used.

−	* ~~Not working for SAM, instead~~ you ~~can use~~ the environment variable R_LIBS_USER.	+	* Setting a value in this field overrides any value you may have set in the environment variable R_LIBS_USER.

← Older revision		Revision as of 21:06, 6 November 2014
Line 95:		Line 95:
	Intended to hold the path to an alternate R package directory, if used.		Intended to hold the path to an alternate R package directory, if used.

−	* Not working ~~on Windows~~, instead use the ~~Windows~~ environment variable R_LIBS_USER.	+	* Not working for SAM, instead you can use the environment variable R_LIBS_USER.

@@ Line 57: / Line 57: @@
 ==Remote Workspaces URL==
-Development versions of geWorkbench have a feature which allows a workspace to be saved to a remote server for later retrieval or sharing.
+Development versions of geWorkbench have a feature which allows a [[Workspace]] to be saved to a remote server for later retrieval or sharing.
 ==Soft Limit on Cytoscape Networks Objects==

@@ Line 11: / Line 11: @@
 ==Text Editor==
-The user can change the default text editor used to view data files.  For example, when you right-click on a data node in the Project Folders component, "View in Editor" is one of the options offered.
+The user can change the default text editor used to view data files.  For example, when you right-click on a data node in the [[Workspace]], "View in Editor" is one of the options offered.
 ==Visualization==