SOM - Revision history

Smith at 00:28, 23 January 2014

2014-01-23T00:28:19Z

2013-07-16T19:48:21Z

‎SOM Clusters Viewer

2013-07-16T19:48:01Z

‎SOM Parameters

2012-03-07T18:16:11Z

‎Analysis Actions

2012-03-01T23:55:01Z

‎SOM Parameters

2010-12-09T22:07:34Z

2009-07-30T21:58:51Z

‎Service

2009-07-29T23:46:00Z

‎Zooming

2009-07-29T23:43:04Z

‎Left-click action

2009-07-29T23:41:25Z

‎Mouse over

@@ Line 107: / Line 107: @@
 ====Image Snapshot====
-Add a snapshot of the selected cluster to the Project Folders component.
+Add a snapshot of the selected cluster to the [[Workspace]].
 ====Add to Set====

← Older revision		Revision as of 19:48, 16 July 2013
Line 69:		Line 69:


−	[[Image:T_SOM_result.png]]	+	[[Image:T_SOM_result.png\|{{ImageMaxWidth}}]]

	===Mouse over===		===Mouse over===

← Older revision		Revision as of 19:48, 16 July 2013
Line 15:		Line 15:
	==SOM Parameters==		==SOM Parameters==

−	[[Image:SOM_Parameters.png]]	+	[[Image:SOM_Parameters.png\|{{ImageMaxWidth}}]]

@@ Line 43: / Line 43: @@
 ==Analysis Actions==
-===Analyze===
+This component uses the standard [[Analysis_Framework|analysis component framework]], which provides three buttons:
 ==SOM Example==

← Older revision	Revision as of 22:07, 9 December 2010
(No difference)

@@ Line 38: / Line 38: @@
 This option forces all SOM vectors in the network to be adapted regardless of proximity to the winning node. In this case the Alpha parameter is scaled based on the distance between the SOM vector to be adapted and the winning node's SOM vector.
-==Service==
+==Services (Grid)==
-The Service subtab allows the user to select which compute server to use to run the analysis: Local or Grid. The local instance of the server runs on the user's machine; GRID allows the user to pick up one among the available caGrid-enabled versions of SOM Clustering.
 ==Analysis Actions==

@@ Line 91: / Line 91: @@
 ====Zooming====
-While left clicking on a cluster display, dragging the mouse downwards will zoom in and dragging the mouse upwards will zoom out.
+While left-clicking on a cluster display, dragging the mouse downwards and to one side or the other will produce a selection box, which will have the effect of zooming in on the region selected.  Dragging the mouse upwards will zoom back out.
 ===Right-click menu===

@@ Line 86: / Line 86: @@
 [[Image:T_SOM_show_selected.png]]
-===Left-click action===
+===Left-click actions===
 When a point on a cluster is clicked on with the mouse, the marker and array it corresponds to will be highlighted in the Markers and Arrays/Phenotypes components, respectively.
 ===Right-click menu===

@@ Line 77: / Line 77: @@
 ===Mouse over===
-Mousing over a particular point on any cluster will show the marker and array that point is associated with.
+Mousing over a particular point on any cluster will show the marker (probeset), the array and the expression value that the point is associated with.
 [[Image:T_SOM_mouse-over.png]]