SkyBase - Revision history

Smith: /* Controls */

2015-01-28T01:01:23Z

‎Controls

2014-04-22T15:39:20Z

‎Right-click menu

2014-04-21T23:43:59Z

‎Table

2014-04-21T23:39:58Z

‎Bar Chart

2014-04-21T23:33:51Z

‎Controls

2014-04-21T23:31:40Z

‎Controls

2014-04-21T23:15:44Z

‎Controls

2014-04-21T23:15:02Z

‎Controls

2014-04-17T22:41:12Z

‎Running a SkyBase query

2014-01-23T18:33:18Z

@@ Line 177: / Line 177: @@
 ===Controls===
-* '''ATP''' - Add Structure to Project - The "ATP" button will add the currently displayed protein structure file (PDB file) as a new node in the [[Workspace]].
+* '''ATW''' - Add Structure to Workspace- The "ATW" button will add the currently displayed protein structure file (PDB file) as a new node in the [[Workspace]].
 * '''VAT''' - View alignment between model and template - display the model-template sequence alignment in Jalview.
 * '''VAQ''' - View alignment between model and query - display the model-query sequence alignment in Jalview.

← Older revision		Revision as of 15:39, 22 April 2014
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		+	* Properties - adjust the appearance of the chart.
		+	* Copy - copy an image of the chart to the clipboard for pasting into another application such as Word.
		+	* Save as - Save an image of the chart in PNG format.
		+	* Print - print the chart.
		+	* Zoom in, zoom out - range axis only. Can also zoom in and out using mouse left-click right and left drag motion.
		+	* Auto range - readjust chart to fit all data.
	* '''Image Snapshot''' - save an image of the chart to the Workspace.		* '''Image Snapshot''' - save an image of the chart to the Workspace.

← Older revision		Revision as of 23:43, 21 April 2014
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	[[Image:SkyBase_1e09_upper_right.png\|{{ImageMaxWidth}}]]		[[Image:SkyBase_1e09_upper_right.png\|{{ImageMaxWidth}}]]
		+
		+
		+	====Right-click menu====
		+
		+	* '''Export to CSV''' - Export of the table to a CSV format file is available from a right-click menu on the table itself, or using the "Export Table to CSV" button at the bottom of the table. The data is exported in the same order in which it is displayed.

	===Bar Chart===		===Bar Chart===

← Older revision		Revision as of 23:39, 21 April 2014
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	[[Image:SkyBase_BarChart.png\|{{ImageMaxWidth}}]]		[[Image:SkyBase_BarChart.png\|{{ImageMaxWidth}}]]
		+
		+
		+	====Right-click menu====
		+
		+	Right-clicking on the chart will produce a pop-up menu with standard controls.
		+
		+
		+	[[Image:SkyBase_chart_right_click.png]]
		+
		+
		+	* '''Image Snapshot''' - save an image of the chart to the Workspace.

	===Alignments===		===Alignments===

@@ Line 158: / Line 158: @@
 * '''VAT''' - View alignment between model and template - display the model-template sequence alignment in Jalview.
 * '''VAQ''' - View alignment between model and query - display the model-query sequence alignment in Jalview.
-* '''Export Table to CSV''' - Export the entire table as a CSV format file.
+* '''Export Table to CSV''' - Export the entire table as a CSV format file.  The data is written to file in the same order in which it is displayed on screen (e.g. after sorting).
 ===Exceptions===

@@ Line 159: / Line 159: @@
 * '''VAQ''' - View alignment between model and query - display the model-query sequence alignment in Jalview.
-====Exceptions====
+===Exceptions===
 * If a number, such as pG is not valid or missing, a zero will be substituted.
 * Missing PDB files and missing sequence alignments are properly handled.

@@ Line 76: / Line 76: @@
 # Select the SkyBase analysis component in the Control area of geWorkbench.
 # Set the parameters as desired.
-# Select the grid service in the "Services" tab.
+# Select the '''grid service''' in the "Services" tab (there is no local service).
 # Back on the Parameters tab, hit "Analyze".