User:Ginhoven - Revision history

Ginhoven at 15:56, 12 April 2006

2006-04-12T15:56:32Z

2006-03-29T21:37:57Z

2006-03-29T21:37:20Z

2006-03-29T20:22:17Z

2006-03-29T20:19:34Z

2006-03-29T20:16:33Z

2006-03-29T19:21:03Z

2006-03-29T19:14:25Z

2006-03-29T17:40:46Z

2006-03-29T17:39:54Z

@@ Line 102: / Line 102: @@
 '''Do we need more details on reading the data output?'''
 '''We need to explain more about the output.'''
 The Load button allows you to load an external Blast file in HTML format into the viewer.

@@ Line 101: / Line 101: @@
 '''(Should we say anything about e value and bit score in this tutorial?)'''
 '''Do we need more details on reading the data output?'''
-'''We need to explain more about the output'''
+'''We need to explain more about the output.'''
 The Load button allows you to load an external Blast file in HTML format into the viewer.

@@ Line 101: / Line 101: @@
 '''(Should we say anything about e value and bit score in this tutorial?)'''
 '''Do we need more details on reading the data output?'''
 The Load button allows you to load an external Blast file in HTML format into the viewer.

@@ Line 86: / Line 86: @@
 *Observe the progress bar, Blast is now runnning.
-*You can check the server status  by hitting the Refresh button, under the Service tab.  This will give you an idea of how busy the Columbia Machine is.
+*You can check the server status  by hitting the Refresh button, under the Service tab.  Then you will an idea if the Columbia Machine is processing a lot of queries.
 [[Image:(T)Blast Tutorial4.png]]

@@ Line 77: / Line 77: @@
 *Click on the Service tab, select Columbia.
-'''Note:''' The text field at the bottom shows that one sequence has been selected.  If you have a Fasta file that has multiple sequences, you can select the ones you want in the Markers componenet and activate this selection, letting you search on a subset. You may search on all sequences in a file by clicking the All Markers checkbox.
+'''Note:''' The text field at the bottom shows that one sequence has been selected.  If you have a Fasta file that has multiple sequences, you can select the ones you want in the Markers component and activate this selection, letting you search on a subset. You may search on all sequences in a file by clicking the All Markers checkbox.
 *Press the curved arrow submit button.

@@ Line 31: / Line 31: @@
 For the purpose of this tutorial use the file "NM _024426-Wilms.Fasta" provided in the tutorial data directory.  This is a nucleotide sequence file.  There is a second file which contains the corresponding protein sequence "NP_077744-Wilms.fasta".
-Provide a little background info about Wilm's tumor. (It was chosen at random).
+'''Provide a little background info about Wilm's tumor. (It was chosen at random).'''
 * In the Visualization Area click on the Sequence Alignment tab.

← Older revision		Revision as of 19:21, 29 March 2006
Line 98:		Line 98:

	You can also add just the aligned parts by clicking on the tab Only Add Aligned Parts.		You can also add just the aligned parts by clicking on the tab Only Add Aligned Parts.
		+
		+	'''(Should we say anything about e value and bit score in this tutorial?)'''
		+	'''Do we need more details on reading the data output?'''

	The Load button allows you to load an external Blast file in HTML format into the viewer.		The Load button allows you to load an external Blast file in HTML format into the viewer.

← Older revision		Revision as of 17:40, 29 March 2006
Line 98:		Line 98:

	You can also add just the aligned parts by clicking on the tab Only Add Aligned Parts.		You can also add just the aligned parts by clicking on the tab Only Add Aligned Parts.
		+
		+	The Load button allows you to load an external Blast file in HTML format into the viewer.
		+

	[[Image:(T)Blast Tutorial5.png]]		[[Image:(T)Blast Tutorial5.png]]
−
−	~~The Load button allows you to load an external Blast file in HTML format into the viewer.~~

← Older revision		Revision as of 17:39, 29 March 2006
Line 100:		Line 100:

	[[Image:(T)Blast Tutorial5.png]]		[[Image:(T)Blast Tutorial5.png]]
		+
		+	The Load button allows you to load an external Blast file in HTML format into the viewer.