User:Osborne - Revision history

Osborne: /* Load the data (alternate) */

2006-11-02T20:43:47Z

‎Load the data (alternate)

2006-11-02T20:42:58Z

‎Load the data (alternate)

2006-11-02T20:42:23Z

‎Load the data (alternate)

2006-11-02T20:41:34Z

‎Load the data (alternate)

2006-11-02T20:39:10Z

‎Load the data (alternate)

2006-11-02T20:34:09Z

‎Load the data (alternate)

2006-11-02T18:17:05Z

‎Set the parameters

2006-11-02T18:16:36Z

‎Set the parameters

2006-11-02T18:15:58Z

2006-11-02T18:13:44Z

‎Load the data

@@ Line 80: / Line 80: @@
 === Load the data (alternate) ===
-Our tutorial experiment has already been loaded into NCI's instance of caArray. The previous steps can be bypassed and the experiment loaded directly into geWorkbench by following If you have an experiment which is already loaded into NCI's caArray instance then the data can be loaded by following the steps below. Generic instructions on loading remote data can be found in the tutorial entitled [[Tutorial_-_Projects_and_Data_Files#Loading_data_from_a_remote_instance_of_caArray]]
+Our tutorial experiment has already been loaded into NCI's instance of caArray. The previous steps can be bypassed and the experiment loaded directly into geWorkbench by following If you have an experiment which is already loaded into NCI's caArray instance then the data can be loaded by following the steps below. Generic instructions on loading remote data can be found in the [http://wiki.c2b2.columbia.edu/workbench/index.php/Tutorial_-_Projects_and_Data_Files#Loading_data_from_a_remote_instance_of_caArray tutorial]
 # Select File -> Open for your project

@@ Line 80: / Line 80: @@
 === Load the data (alternate) ===
-Our tutorial experiment has already been loaded into NCI's instance of caArray. The previous steps can be bypassed and the experiment loaded directly into geWorkbench by following If you have an experiment which is already loaded into NCI's caArray instance then the data can be loaded by following the steps below. Generic instructions on loading remote data can be found  [[Tutorial_-_Projects_and_Data_Files#Loading_data_from_a_remote_instance_of_caArray here.]]
+Our tutorial experiment has already been loaded into NCI's instance of caArray. The previous steps can be bypassed and the experiment loaded directly into geWorkbench by following If you have an experiment which is already loaded into NCI's caArray instance then the data can be loaded by following the steps below. Generic instructions on loading remote data can be found in the tutorial entitled [[Tutorial_-_Projects_and_Data_Files#Loading_data_from_a_remote_instance_of_caArray]]
 # Select File -> Open for your project

@@ Line 80: / Line 80: @@
 === Load the data (alternate) ===
-Our tutorial experiment has already been loaded into NCI's instance of caArray. The previous steps can be bypassed and the experiment loaded directly into geWorkbench by following If you have an experiment which is already loaded into NCI's caArray instance then the data can be loaded by following the steps below. Generic instructions on loading remote data can be found here [[Tutorial_-_Projects_and_Data_Files#Loading_data_from_a_remote_instance_of_caArray]]
+Our tutorial experiment has already been loaded into NCI's instance of caArray. The previous steps can be bypassed and the experiment loaded directly into geWorkbench by following If you have an experiment which is already loaded into NCI's caArray instance then the data can be loaded by following the steps below. Generic instructions on loading remote data can be found  [[Tutorial_-_Projects_and_Data_Files#Loading_data_from_a_remote_instance_of_caArray here.]]
 # Select File -> Open for your project

@@ Line 80: / Line 80: @@
 === Load the data (alternate) ===
-If you have an experiment which is already loaded into NCI's caArray instance then the data can be loaded by following these steps:
+Our tutorial experiment has already been loaded into NCI's instance of caArray. The previous steps can be bypassed and the experiment loaded directly into geWorkbench by following If you have an experiment which is already loaded into NCI's caArray instance then the data can be loaded by following the steps below. Generic instructions on loading remote data can be found here [[Tutorial_-_Projects_and_Data_Files#Loading_data_from_a_remote_instance_of_caArray]]
 # Select File -> Open for your project

@@ Line 82: / Line 82: @@
 If you have an experiment which is already loaded into NCI's caArray instance then the data can be loaded by following these steps:
 [[Image:NWUTutorialExperimentLoaded.jpg]]
 === Log 2 Transformation (optional) ===

← Older revision		Revision as of 20:34, 2 November 2006
Line 82:		Line 82:
	If you have an experiment which is already loaded into NCI's caArray instance then the data can be loaded by following these steps:		If you have an experiment which is already loaded into NCI's caArray instance then the data can be loaded by following these steps:

		+
		+	[[Image:NWUTutorialExperimentLoaded.jpg]]

	=== Log 2 Transformation (optional) ===		=== Log 2 Transformation (optional) ===

@@ Line 71: / Line 71: @@
 ===Set the parameters===
 # Select the appropriate chip type, most common Affy File types are provided. If your file type is missing you will have to add the
 library files (downloaded from Affy's website) to the geWorkbench directory

@@ Line 72: / Line 72: @@
 ===Set the parameters===
 # Select the appropriate chip type, most common Affy File types are provided. If your file type is missing you will have to add the
-library files (downloaded from Affy's website) to the geWorkbench directory.
+library files (downloaded from Affy's website) to the geWorkbench directory
-# With 9 chips from the HGU133Plus2 platform it will take a couple of minutes to load up. When you're done check and inspect that each of the chips was loaded successfully with the correct number. One quick way to do this is to look at the Microarray Tabular Viewer as shown below.
+# With 9 chips from the HGU133Plus2 platform it will take a couple of minutes to load up. When you're done check and inspect that each of the chips was loaded successfully with the correct number. One quick way to do this is to look at the Microarray Tabular Viewer as shown below
 [[Image:MicroarrayAnalysisTutorialLoadedDataTabularMicroView.JPG]]
 === Load the data (alternate) ===

@@ Line 70: / Line 70: @@
 [[Image:MicroarrayAnalysisTutorialLoadingMergedSet.JPG]]
-##Select the appropriate chip type, most common Affy File types are provided. If your file type is missing you will have to add the
+## Select the appropriate chip type, most common Affy File types are provided. If your file type is missing you will have to add the
 library files (downloaded from Affy's website) to the geWorkbench directory.
-##With 9 chips from the HGU133Plus2 platform it will take a couple of minutes to load up. When you're done check and inspect that each of the chips was loaded successfully with the correct number. One quick way to do this is to look at the Microarray Tabular Viewer as shown below.
+## With 9 chips from the HGU133Plus2 platform it will take a couple of minutes to load up. When you're done check and inspect that each of the chips was loaded successfully with the correct number. One quick way to do this is to look at the Microarray Tabular Viewer as shown below.
 [[Image:MicroarrayAnalysisTutorialLoadedDataTabularMicroView.JPG]]
 === Log 2 Transformation (optional) ===