Workspace - Revision history

Smith: /* Overview */

2014-01-10T22:07:37Z

‎Overview

Smith: /* Remove */

2014-01-10T22:06:09Z

‎Remove

Smith: /* Overview */

2014-01-10T22:04:55Z

‎Overview

Smith: /* Overview */

2014-01-10T22:04:24Z

‎Overview

Smith: /* Workspaces */

2014-01-02T21:24:18Z

‎Workspaces

Smith: /* Special considerations on saving and restoring workspaces */

2014-01-02T21:13:24Z

‎Special considerations on saving and restoring workspaces

Smith: /* Special considerations on saving and restoring workspaces */

2014-01-02T21:10:57Z

‎Special considerations on saving and restoring workspaces

Smith: /* Saving the Workspace */

2014-01-02T21:02:33Z

‎Saving the Workspace

Smith: /* Save */

2013-11-08T22:48:18Z

‎Save

Smith: /* Rename */

2013-11-08T22:47:33Z

‎Rename

@@ Line 21: / Line 21: @@
 The Workspace may contain several heterologous datasets. These datasets can include input (source) data and derived data (results) associated with an experiment as well as image files. Source data can be loaded from the user’s local storage or from remote servers.  Loading datasets into the geWorkbench Workspace does not change their physical storage locations.
-The top menu-bar items [[Menu_Bar#File|File]] and [[Menu_Bar#Edit|Edit]] also apply to items in the Workspace.  They offer many of the same options shown below, except e.g. Microarray merging is only available from the top level [[Menu_Bar#File|File]] menu.
+'''Note''' - The top menu-bar items [[Menu_Bar#File|File]] and [[Menu_Bar#Edit|Edit]] also apply to items in the Workspace.  They offer many of the same options shown below, except e.g. Microarray merging is only available from the top level [[Menu_Bar#File|File]] menu.
 ==Workspace Menu Options==

@@ Line 82: / Line 82: @@
 ===Remove===
-The selected data node and any child data nodes it may have will be removed.
+The selected data nodes and any child data nodes will be removed.  Multiple selections can be made.
 ==Data Node Hover-text Information==

@@ Line 21: / Line 21: @@
 The Workspace may contain several heterologous datasets. These datasets can include input (source) data and derived data (results) associated with an experiment as well as image files. Source data can be loaded from the user’s local storage or from remote servers.  Loading datasets into the geWorkbench Workspace does not change their physical storage locations.
-The top menu-bar items [[Menu_Bar#File|File]] and [[Menu_Bar#Edit]] also apply to items in the Workspace.  They offer many of the same options shown below, except e.g. Microarray merging is only available from the top level [[Menu_Bar#File|File]] menu.
+The top menu-bar items [[Menu_Bar#File|File]] and [[Menu_Bar#Edit|Edit]] also apply to items in the Workspace.  They offer many of the same options shown below, except e.g. Microarray merging is only available from the top level [[Menu_Bar#File|File]] menu.
 ==Workspace Menu Options==

@@ Line 21: / Line 21: @@
 The Workspace may contain several heterologous datasets. These datasets can include input (source) data and derived data (results) associated with an experiment as well as image files. Source data can be loaded from the user’s local storage or from remote servers.  Loading datasets into the geWorkbench Workspace does not change their physical storage locations.
+The top menu-bar items [[Menu_Bar#File|File]] and [[Menu_Bar#Edit]] also apply to items in the Workspace.  They offer many of the same options shown below, except e.g. Microarray merging is only available from the top level [[Menu_Bar#File|File]] menu.
 ==Workspace Menu Options==

@@ Line 119: / Line 119: @@
 ====Special considerations on saving and restoring workspaces====
 * '''Versions''' - Workspaces in general may not be compatible across different versions of geWorkbench.
+* '''Loaded components''' - The configuration in the [[Component_Configuration_Manager| CCM]] of which components are loaded and which are not is not saved when the workspace is saved; it is maintained separately.
-* '''Changes to loaded components''' - If a workspace is saved, and then changes are made to which components are loaded in the [[Component_Configuration_Manager| CCM]], then in rare cases problems may occur when one attempts to reload the saved workspace.  The configuration in the [[Component_Configuration_Manager| CCM]] of which components are loaded and which are not is not saved when the workspace is saved; it is maintained separately.
+* '''Changes to loaded components''' - If a workspace is saved, and then changes are made to which components are loaded in the [[Component_Configuration_Manager| CCM]], then in rare cases problems may occur when one attempts to reload the saved workspace.

← Older revision		Revision as of 21:13, 2 January 2014
Line 120:		Line 120:
	* '''Versions''' - Workspaces in general may not be compatible across different versions of geWorkbench.		* '''Versions''' - Workspaces in general may not be compatible across different versions of geWorkbench.

−	* '''Changes to loaded components''' - If a workspace is saved, and then changes are made to which components are loaded in the [[Component_Configuration_Manager\| CCM]], then in rare cases problems may occur when one attempts to reload the saved workspace.	+	* '''Changes to loaded components''' - If a workspace is saved, and then changes are made to which components are loaded in the [[Component_Configuration_Manager\| CCM]], then in rare cases problems may occur when one attempts to reload the saved workspace. The configuration in the [[Component_Configuration_Manager\| CCM]] of which components are loaded and which are not is not saved when the workspace is saved; it is maintained separately.

← Older revision		Revision as of 21:10, 2 January 2014
Line 120:		Line 120:
	* '''Versions''' - Workspaces in general may not be compatible across different versions of geWorkbench.		* '''Versions''' - Workspaces in general may not be compatible across different versions of geWorkbench.

−	* '''Changes to loaded components''' - If a workspace is saved, and then changes are made to which components are loaded in the [[Component_Configuration_Manager\| CCM]], problems may occur when one attempts to reload the saved workspace.	+	* '''Changes to loaded components''' - If a workspace is saved, and then changes are made to which components are loaded in the [[Component_Configuration_Manager\| CCM]], then in rare cases problems may occur when one attempts to reload the saved workspace.

@@ Line 115: / Line 115: @@
 ===Saving the Workspace===
-Saving the workspace saves all its data to a file on disk.  The workspace can later be reloaded to resume work.  However, workspaces in general may not be compatible across different versions of geWorkbench.
+Saving the workspace saves all its data to a file on disk.  The workspace can later be reloaded to resume work.
 [[Image:File_Save_Workspace.png]]
 ===Opening a Saved Workspace===

@@ Line 57: / Line 57: @@
 Save the currently selected data node.  This is implemented for at least the below data types.  If saving of a particular type has not been implemented, the "Save" option will be disabled (grayed-out).
-* Microarray gene expression -  data is saved using the geWorkbench ".exp" format, regardless of the original format. This allows saving e.g. a merged dataset, and/or any array and marker sets that may have been created.
+* '''Microarray gene expression''' -  data is saved using the geWorkbench ".exp" format, regardless of the original format. This allows saving e.g. a merged dataset, and/or any array and marker sets that may have been created.
-* FASTA - saved in FASTA format (.fasta).
+* '''FASTA''' - saved in FASTA format (.fasta).
-* PDB - saved in PDB format (.pdb).
+* '''PDB''' - saved in PDB format (.pdb).
-* Network - saved using the Adjacency Matrix "ADJ" format (.adj).
+* '''Network''' - saved using the Adjacency Matrix "ADJ" format (.adj).
-* t-test result - saved as comma separated value (.csv) file.
+* '''t-test result''' - saved as comma separated value (.csv) file.
-* Image - saved as PNG file (.png).
+* '''Image''' - saved as PNG file (.png).
 For each file type, a file browser with a filter for the target file type extension (e.g. .fasta) will be opened.

← Older revision		Revision as of 22:47, 8 November 2013
Line 78:		Line 78:


−	[[Image:~~Project_Folders_Rename_Project~~.png]]	+	[[Image:Workspace_Rename_Node.png]]

	===Remove===		===Remove===