Difference between revisions of "Tutorial Data"
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| − | *cardiogenomics.med.harvard.edu/ | + | * '''cardiogenomics.med.harvard.edu/''' -Contains 10 individual MAS5/GCOS format data files. |
| − | *webmatrix_quantile_log2_dev1_mv0.exp | + | * '''webmatrix_quantile_log2_dev1_mv0.exp''' -A geWorkbench "exp" format matrix file containing filtered, normalized data. This data originally derives from the file "webmatrix.exp". |
| − | + | * '''NM_024426-Wilms.fasta''' -A Genbank nucleotide seqeuence file. | |
| − | *NM_024426-Wilms.fasta | + | * '''NP_077744-Wilms.fasta''' -A Genbank protein seqeuence file. |
| − | *NP_077744-Wilms.fasta | + | * '''H1H5_HistoneDB_NHGRI.fasta''' -Contains H1 and H5 histone sequences from the NHGRI. |
| − | *H1H5_HistoneDB_NHGRI.fasta | + | * '''ClusterTree38_Sequences.fasta''' -Contains sequences derived from hierarchical clustering. |
| − | *ClusterTree38_Sequences.fasta | + | * '''cluster_tree_12markers.csv''' -Contains a list of markers derived from hierarchical clustering. |
| − | *cluster_tree_12markers.csv | ||
Revision as of 16:56, 22 May 2006
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Home | Quick Start | Basics | Menu Bar | Preferences | Component Configuration Manager | Workspace | Information Panel | Local Data Files | File Formats | caArray | Array Sets | Marker Sets | Microarray Dataset Viewers | Filtering | Normalization | Tutorial Data | geWorkbench-web Tutorials |
Analysis Framework | ANOVA | ARACNe | BLAST | Cellular Networks KnowledgeBase | CeRNA/Hermes Query | Classification (KNN, WV) | Color Mosaic | Consensus Clustering | Cytoscape | Cupid | DeMAND | Expression Value Distribution | Fold-Change | Gene Ontology Term Analysis | Gene Ontology Viewer | GenomeSpace | genSpace | Grid Services | GSEA | Hierarchical Clustering | IDEA | Jmol | K-Means Clustering | LINCS Query | Marker Annotations | MarkUs | Master Regulator Analysis | (MRA-FET Method) | (MRA-MARINa Method) | MatrixREDUCE | MINDy | Pattern Discovery | PCA | Promoter Analysis | Pudge | SAM | Sequence Retriever | SkyBase | SkyLine | SOM | SVM | T-Test | Viper Analysis | Volcano Plot |
All data sets used in the tutorials are available from the download area of our site.
The file tutorial_data.zip contains the following files:
- cardiogenomics.med.harvard.edu/ -Contains 10 individual MAS5/GCOS format data files.
- webmatrix_quantile_log2_dev1_mv0.exp -A geWorkbench "exp" format matrix file containing filtered, normalized data. This data originally derives from the file "webmatrix.exp".
- NM_024426-Wilms.fasta -A Genbank nucleotide seqeuence file.
- NP_077744-Wilms.fasta -A Genbank protein seqeuence file.
- H1H5_HistoneDB_NHGRI.fasta -Contains H1 and H5 histone sequences from the NHGRI.
- ClusterTree38_Sequences.fasta -Contains sequences derived from hierarchical clustering.
- cluster_tree_12markers.csv -Contains a list of markers derived from hierarchical clustering.
