Hardware

From Informatics

see also: Group Machines

Contents 1 afapp1 1.1 caIntegrator2 1.2 caArray 1.3 UPT (Universal Provisioning Tool) 1.4 Apache Ant 1.5 Java 2 afdb1 2.1 Oracle Database Server 3 afdev 3.1 MySQL Server 3.2 PHP 3.3 Tomcat Java Servlet Engine 3.4 Apache web server 4 afdev2 4.1 GenePattern Server and GenePattern Client 4.2 caGWAS 4.3 caGrid Portal 4.4 MySQL Server 5 mysql 5.1 MySQL Server 6 saecdb 6.1 SAEC (Serious Adverse Events Consortium) 6.2 MySQL Server 6.3 Java

afapp1

• this server is used primarily for development purposes

caIntegrator2

• version 1.2.0
• installed under /app_data2/caintegrator2_app/
• accessible at:

http://afapp1.c2b2.columbia.edu:47210/caintegrator2

caArray

• version 2.3.1.1
• installed under /app_data1/caarray_app/
• accessible at:

http://afapp1.c2b2.columbia.edu:38080/caarray/home.action

UPT (Universal Provisioning Tool)

• version 4.2
• installed under /app_data1/upt-application/
• accessible at:

http://afapp1.c2b2.columbia.edu:46210/upt/

Apache Ant

• version 1.7.0
• installed under /app_data1/ant-1.7.0/

Java

• version 1.5.0_07
• installed under /app_data1/java/

afdb1

• this is primarily an Oracle database server for development and production purposes

Oracle Database Server

• version 10g Release 2
• Installed under /opt/app/oracle/

afdev

• this machine is used to house and run development applications

MySQL Server

• version 5.0.22
• Installed under /opt/mysql

PHP

• version 5.1.6
• installed under /usr/bin/php.

Tomcat Java Servlet Engine

• version 5.5.23
• installed under /opt/apps/ictv/tomcat

Apache web server

• version 2.2.3
• installed under /usr/sbin/httpd

afdev2

• this server is used primarily for development purposes

GenePattern Server and GenePattern Client

• GenePattern Server 3.0, installed in /opt/apps/GenePatternServer. Web port number is 9999.HSQL port: 9111.
• GenePattern Java Client, installed in /opt/apps/GenePatternClient. The shortcuts are included under the root home directory.
• To access GenePattern through its web client, open a browser and go to the following URL:

http://afdev2.c2b2.columbia.edu:9999/gp/

This page provides access to GenePattern tutorials as well as a guide for using the web client.

caGWAS

• installed under /data/cagwas
• accessible at:

http://afdev2.c2b2.columbia.edu:42210/cagwas/

caGrid Portal

• version 2.2.1
• installed under /data/cagrid_portal/

MySQL Server

• version 5.0.77
• Installed under /data/mysql

mysql

• this is the production MySQL server (a virtual machine), hosting databases for MAGNeT and other C2B2 labs

MySQL Server

• version 5.0.77
• Installed under /data/mysql

saecdb

• this server is used for production purposes

SAEC (Serious Adverse Events Consortium)

• installed under /data/saec/
• accessible at:

http://saeconsortium.org/

MySQL Server

• version 5.0.77
• Installed under /data/mysql

Java

• version 1.5.0_12
• installed under /data/java/