CTD2-Dashboard MRA View Development

From Informatics

new modules

1. MasterRegulator.java: a class which stores the result of master regulator analysis.

2. MraTargetBarcode.java: a class which stores MRA barcode data.

3. MraController.java: a class which will perform the following function:

  1) accept a request with type "mra" from web client.  
  2) if the request parameter "dataType" is "mra", it will read related data from
     a specified file from a given url and parse them to MasterRegulator object.
  3) if the request parameter "dataType" is "cytoscape", it will read related data from
     a specified file from a given url and parse them to CyNetwork object.
  3) if the request parameter "dataType" is "throttle", it will read related data from
     a specified file from a given url and identify a proper throttle value for cytoscape
     to display a safe number of nodes.
  4) send a response with json format data back to web client.

changed modules

1. CyElement.java: add the following attributes for displaying MRA cytoscape view

   public static final String SHAPE = "shape";
   public static final String WEIGHT = "weight";
   public static final String COLOR = "color"; 

2. ctd2.js

  This java script file is changed to define a new backbone route "evidence/:id" and function "showMraView" to map 
  the particular route to MRA view. Also three backbone views are also added:
  var MraView = Backbone.View.extend({...})
  var MraViewRowView = Backbone.View.extend({...})
  var MraBarcodeRowView = Backbone.View.extend({...})

3. index.jsp

  This jsp page is changed to define three more templates in order to display MRA view:
  mra-view-tmpl, mra-view-row-tmpl, mra-barcode-view-row-tmpl

Test Link

Currently You can test the main page from

http://156.145.28.209:8080/ctd2-dashboard/

And test the "MRA" data display from

http://156.145.28.209:8080/ctd2-dashboard/#/observation/1716236