Functional AnnotationDB

From Informatics

Functional AnnotationDB Details

 

• What labs or how many are using the database?

  NESG members

• Who is the main “database authority” for the AnnotationDB?

Markus Fischer (mf2355<at>columbia.edu)

• What kind of database is it? (flat-file, relational, XML, etc)

relational

• Name/Size of database?

Functional Annotation DB

350 structural genomics targets; 13,212 PDB monomers/hits

• Backup procedures? How often?
• Database Backups (Hot, Cold, Both) [and/or]
• Operating System backup

OS Backup

• What servers/operating systems are hosting them (IP addresses)

luna.bioc.columia.edu

• Approximately how many *active* users?

N/A

• How often is the database used? (Daily, Weekly, Monthly)

N/A

• What platforms are being used? (Oracle, MySQL, PostgreSQL, etc)

MySQL 4.1.12

• What applications are using these databases?
• Web interface?
• Application (GUI)?
• Command line interface (CUI)?

Web interface - Perl CGI

• Is it accessible from outside the firewall to public users?

YES

• What is the primary purpose of the database & types of data stored?

• The database hosts functional annotations generated by sequence-based and structure-based analysis methods.
• This data shall be used to infer the molecular function for NESG targets with unknown functions.

• May I access the database and if so, what is the login info?

http://luna.bioc.columbia.edu/honiglab/nesg/cgi-bin/browse.pl