geWorkbench

==Annotation data required by certain components==

geWorkbench currently can only read in annotation files based on the Affymetrix annotation file format.  Following is a list of the column headers for data types required by various geWorkbench components.

* All components require "'''Probe Set ID'''".

{| border="1" cellpadding="5" cellspacing="0" style="margin:10px;"
|-style="color:black;background-color:#AAFFAA;"
!Component
!Columns required

|-
|CNKB
|Entrez Gene

|-
|Gene Ontology
|Gene Ontology Biological Process, Gene Ontology Cellular Component, Gene Ontology Molecular Function

|-
|Marker Annotations
|

|-
|Sequence Retrieval (EBI)
|

|-
|Sequence Retrieval (Santa Cruz)
|

|}


==List of All Affy headers==

* Probe Set ID
* GeneChip Array
* Species Scientific Name
* Annotation Date
* Sequence Type
* Sequence Source
* Transcript ID(Array Design)
* Target Description
* Representative Public ID
* Archival UniGene Cluster
* UniGene ID
* Genome Version
* Alignments
* Gene Title
* Gene Symbol
* Chromosomal Location
* Unigene Cluster Type
* Ensembl
* Entrez Gene
* SwissProt
* EC
* OMIM
* RefSeq Protein ID
* RefSeq Transcript ID
* FlyBase
* AGI
* WormBase
* MGI Name
* RGD Name
* SGD accession number
* Gene Ontology Biological Process
* Gene Ontology Cellular Component
* Gene Ontology Molecular Function
* Pathway
* InterPro
* Trans Membrane
* QTL
* Annotation Description
* Annotation Transcript Cluster
* Transcript Assignments
* Annotation Notes