Difference between revisions of "Components"

Line 12: Line 12:
 
* Reverse Engineering (should perhaps be broken into seperate components)
 
* Reverse Engineering (should perhaps be broken into seperate components)
 
* Scatter Plot
 
* Scatter Plot
 +
* Tabular microarray
 +
* Sequence retriever
  
  
Line 28: Line 30:
 
* caScript (Not yet complete)
 
* caScript (Not yet complete)
 
* Synteny parameters (Does not generate proper dataset subnodes)
 
* Synteny parameters (Does not generate proper dataset subnodes)
 +
* Synteny main paen (Does not receive proper dataset subnodes, function not clear)
 
* Marker Annotations ("Retrieve Annotations" button should be disabled until user makes marker selection)
 
* Marker Annotations ("Retrieve Annotations" button should be disabled until user makes marker selection)
 
* Color Mosaic ("Pat" and "Abs" buttons appear to do nothing)
 
* Color Mosaic ("Pat" and "Abs" buttons appear to do nothing)
 
* Expression Profiles (Performs large computations on event reception and tab selection)
 
* Expression Profiles (Performs large computations on event reception and tab selection)
 
* caBIO Pathways (Function not tied properly to datasets, operation not clear)
 
* caBIO Pathways (Function not tied properly to datasets, operation not clear)

Revision as of 16:19, 2 January 2006

geWorkBench Component List and Status

Core Components (bundled with main application)

Major Components

  • Analysis (Hierarchical Clustering, SOM, T-Test, Multi T-Test)
  • Filtering (Deviation, Affy detection call, Expression threshold, Genepix Flags, Missing values, 2 channel)
  • Normalization (Housekeeping, Log2 transform, Marker based centering, Mean variance, Array based centering, Missing value, Threshold, Quantile)
  • Expression Value Distribution
  • Go Terms
  • Reverse Engineering (should perhaps be broken into seperate components)
  • Scatter Plot
  • Tabular microarray
  • Sequence retriever


Minor Components

  • Dataset Annotation
  • Dataset history
  • Experiment info

Additional Components (that pass the Plugin certification checklist)

Components that do not yet pass the Plugin certification checklist

  • Associations (Interface needs to be standardized)
  • caScript (Not yet complete)
  • Synteny parameters (Does not generate proper dataset subnodes)
  • Synteny main paen (Does not receive proper dataset subnodes, function not clear)
  • Marker Annotations ("Retrieve Annotations" button should be disabled until user makes marker selection)
  • Color Mosaic ("Pat" and "Abs" buttons appear to do nothing)
  • Expression Profiles (Performs large computations on event reception and tab selection)
  • caBIO Pathways (Function not tied properly to datasets, operation not clear)