Difference between revisions of "Components"
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* Normalization (Housekeeping, Log2 transform, Marker based centering, Mean variance, Array based centering, Missing value, Threshold, Quantile) | * Normalization (Housekeeping, Log2 transform, Marker based centering, Mean variance, Array based centering, Missing value, Threshold, Quantile) | ||
* Expression Value Distribution | * Expression Value Distribution | ||
| − | |||
| − | |||
* Scatter Plot | * Scatter Plot | ||
* Tabular microarray | * Tabular microarray | ||
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* Volcano plot | * Volcano plot | ||
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=== Additional Components (that pass the [[Plugin certification checklist]]) === | === Additional Components (that pass the [[Plugin certification checklist]]) === | ||
| + | * Go Terms | ||
| + | * Reverse Engineering (should perhaps be broken into seperate components) | ||
| + | * Sequence retriever | ||
=== Components that do not yet pass the [[Plugin certification checklist]] === | === Components that do not yet pass the [[Plugin certification checklist]] === | ||
Revision as of 16:21, 2 January 2006
Contents
geWorkBench Component List and Status
Core Components (bundled with main application)
Major Components
- Microaray Panel
- Analysis (Hierarchical Clustering, SOM, T-Test, Multi T-Test)
- Filtering (Deviation, Affy detection call, Expression threshold, Genepix Flags, Missing values, 2 channel)
- Normalization (Housekeeping, Log2 transform, Marker based centering, Mean variance, Array based centering, Missing value, Threshold, Quantile)
- Expression Value Distribution
- Scatter Plot
- Tabular microarray
- Volcano plot
Minor Components
- Dataset Annotation
- Dataset history
- Experiment info
Additional Components (that pass the Plugin certification checklist)
- Go Terms
- Reverse Engineering (should perhaps be broken into seperate components)
- Sequence retriever
Components that do not yet pass the Plugin certification checklist
- Associations (Interface needs to be standardized)
- caScript (Not yet complete)
- Synteny parameters (Does not generate proper dataset subnodes)
- Synteny main paen (Does not receive proper dataset subnodes, function not clear)
- Marker Annotations ("Retrieve Annotations" button should be disabled until user makes marker selection)
- Color Mosaic ("Pat" and "Abs" buttons appear to do nothing)
- Expression Profiles (Performs large computations on event reception and tab selection)
- caBIO Pathways (Function not tied properly to datasets, operation not clear)
