Difference between revisions of "Talk:Home"

(→‎Feature requests for geWorkbench)
(→‎Feature requests for geWorkbench)
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== Feature requests for geWorkbench ==
 
== Feature requests for geWorkbench ==
−
=== Menu ===
+
=== Menu ===  
 +
----
 
==== File ====
 
==== File ====
 +
----
 
==== Edit ====
 
==== Edit ====
 +
----
 
==== View ====
 
==== View ====
 +
----
 
==== Commands ====
 
==== Commands ====
 +
----
 
==== Tools ====
 
==== Tools ====
 +
----
 
==== Help ====
 
==== Help ====
  
 +
----
 
----
 
----
 
===  Project Folders ===
 
===  Project Folders ===
  
 +
----
 
----
 
----
  
 
=== Markers ===
 
=== Markers ===
  
 +
----
 
----
 
----
  
 
=== Arrays/Phenotypes ===
 
=== Arrays/Phenotypes ===
  
 +
----
 
----
 
----
  
 
=== Sets ===
 
=== Sets ===
  
 +
----
 
----
 
----
  
 
=== FASTA sequences ===
 
=== FASTA sequences ===
 
==== Promoter ====  
 
==== Promoter ====  
 +
----
 
==== Sequence Panel ====  
 
==== Sequence Panel ====  
 +
----
 
==== Position Histogram ====  
 
==== Position Histogram ====  
 +
----
 
==== Simulation ====  
 
==== Simulation ====  
 +
----
 
===== Network Generator =====  
 
===== Network Generator =====  
 +
----
 
===== Phenotype & Optimizer Options =====  
 
===== Phenotype & Optimizer Options =====  
 +
----
 
===== Interactions Display =====  
 
===== Interactions Display =====  
 +
----
 
==== 5. Sequence alignment ====  
 
==== 5. Sequence alignment ====  
 +
----
 
===== BLAST =====  
 
===== BLAST =====  
 +
----
 
===== HMM =====  
 
===== HMM =====  
 +
----
 
===== Other =====  
 
===== Other =====  
 +
----
 
==== Pattern discovery ====  
 
==== Pattern discovery ====  
 +
----
 
==== Associations ====  
 
==== Associations ====  
 +
----
 
==== caScript ====  
 
==== caScript ====  
 +
----
 
==== Dataset annotations ====  
 
==== Dataset annotations ====  
 +
----
 
==== data history ====  
 
==== data history ====  
 +
----
 
==== Experiment Info ====  
 
==== Experiment Info ====  
  
−
---
+
----
 +
----  
  
 
=== Microarray data ===  
 
=== Microarray data ===  
 
==== Simulation ====  
 
==== Simulation ====  
 +
----
 
==== Network browser ====  
 
==== Network browser ====  
 +
----
 
==== Interactions ====  
 
==== Interactions ====  
 +
----
 
==== Aracne ====  
 
==== Aracne ====  
 +
----
 
==== Tabular Microarray Viewer ====  
 
==== Tabular Microarray Viewer ====  
 +
----
 
==== Sequence Retriever ====  
 
==== Sequence Retriever ====  
 +
----
 
==== Synteny ====  
 
==== Synteny ====  
 +
----
 
==== Microarray viewer ====  
 
==== Microarray viewer ====  
 +
----
 
==== Gene Ontology ====  
 
==== Gene Ontology ====  
 +
----
 
==== GSEA ====  
 
==== GSEA ====  
 +
----
 
==== Reverser Engineering ====  
 
==== Reverser Engineering ====  
 +
----
 
==== Scatter Plot ====  
 
==== Scatter Plot ====  
 +
----
 
==== caBIO pathways ====  
 
==== caBIO pathways ====  
 +
----
 
==== Marker Annotations ====  
 
==== Marker Annotations ====  
 +
----
 
====  Color Mosaic Expression Profiles ====   
 
====  Color Mosaic Expression Profiles ====   
 +
----
 
==== Expression Value Distribution ====  
 
==== Expression Value Distribution ====  
 +
----
 
==== Experiment Info ====  
 
==== Experiment Info ====  
 +
----
 
==== Synteny Parameters ====  
 
==== Synteny Parameters ====  
 +
----
 
===== Program =====  
 
===== Program =====  
 +
----
 
====== MUMmer ======  
 
====== MUMmer ======  
 +
----
 
====== Dots ======  
 
====== Dots ======  
 +
----
 
====== Synteny map ======  
 
====== Synteny map ======  
 +
----
 
===== Genome selections =====  
 
===== Genome selections =====  
 +
----
 
===== Annotations =====  
 
===== Annotations =====  
 +
----
 
==== Normalization ====  
 
==== Normalization ====  
 +
----
 
===== Housekeeping Genes Normalizer =====  
 
===== Housekeeping Genes Normalizer =====  
 +
----
 
===== Log2 Transformation =====  
 
===== Log2 Transformation =====  
 +
----
 
===== Marker-based centering =====  
 
===== Marker-based centering =====  
 +
----
 
===== Mean-variance normalizer =====  
 
===== Mean-variance normalizer =====  
 +
----
 
===== Array-based centering =====  
 
===== Array-based centering =====  
 +
----
 
===== Missing value computations =====  
 
===== Missing value computations =====  
 +
----
 
===== Threshold Normalizer =====  
 
===== Threshold Normalizer =====  
 +
----
 
===== Quantile Normalization =====  
 
===== Quantile Normalization =====  
 +
----
 
==== T-Profiler ====  
 
==== T-Profiler ====  
 +
----
 
==== Analysis ====  
 
==== Analysis ====  
 +
----
 
===== Fast Hierarchical clustering =====  
 
===== Fast Hierarchical clustering =====  
 +
----
 
===== Matrix reduce =====  
 
===== Matrix reduce =====  
 +
----
 
===== Svm classifier =====  
 
===== Svm classifier =====  
 +
----
 
===== Slmr classifier =====  
 
===== Slmr classifier =====  
 +
----
 
===== SOM =====  
 
===== SOM =====  
 +
----
 
===== T-test =====  
 
===== T-test =====  
 +
----
 
===== Multi T-test =====  
 
===== Multi T-test =====  
 +
----
 
==== Associations ====  
 
==== Associations ====  
 +
----
 
==== caScript ====  
 
==== caScript ====  
 +
----
 
==== Dataset Annotations ====  
 
==== Dataset Annotations ====  
 +
----
 
==== Filtering ====  
 
==== Filtering ====  
 +
----
 
===== Deviation filter =====  
 
===== Deviation filter =====  
 +
----
 
===== Affy detection call filter =====  
 
===== Affy detection call filter =====  
 +
----
 
===== Expression threshold filter =====  
 
===== Expression threshold filter =====  
 +
----
 
===== Genepix flags filter =====  
 
===== Genepix flags filter =====  
 +
----
 
===== Missing value filter =====  
 
===== Missing value filter =====  
 +
----
 
===== 2 channel threshold filter =====  
 
===== 2 channel threshold filter =====  
 +
----
 
==== Dataset History ====
 
==== Dataset History ====
 +
----

Revision as of 14:05, 19 September 2006

Contents

Feature requests for geWorkbench

Menu

File

Edit

View

Commands

Tools

Help

Project Folders

Markers

Arrays/Phenotypes

Sets

FASTA sequences

Promoter

Sequence Panel

Position Histogram

Simulation

Network Generator
Phenotype & Optimizer Options
Interactions Display

5. Sequence alignment

BLAST
HMM
Other

Pattern discovery

Associations

caScript

Dataset annotations

data history

Experiment Info

Microarray data

Simulation

Network browser

Interactions

Aracne

Tabular Microarray Viewer

Sequence Retriever

Synteny

Microarray viewer

Gene Ontology

GSEA

Reverser Engineering

Scatter Plot

caBIO pathways

Marker Annotations

Color Mosaic Expression Profiles

Expression Value Distribution

Experiment Info

Synteny Parameters

Program
MUMmer
Dots
Synteny map
Genome selections
Annotations

Normalization

Housekeeping Genes Normalizer
Log2 Transformation
Marker-based centering
Mean-variance normalizer
Array-based centering
Missing value computations
Threshold Normalizer
Quantile Normalization

T-Profiler

Analysis

Fast Hierarchical clustering
Matrix reduce
Svm classifier
Slmr classifier
SOM
T-test
Multi T-test

Associations

caScript

Dataset Annotations

Filtering

Deviation filter
Affy detection call filter
Expression threshold filter
Genepix flags filter
Missing value filter
2 channel threshold filter

Dataset History

Retrieved from "http://wiki.c2b2.columbia.edu/workbench/index.php?title=Talk:Home&oldid=3646"