Difference between revisions of "Components"
| Line 8: | Line 8: | ||
* Filtering (Deviation, Affy detection call, Expression threshold, Genepix Flags, Missing values, 2 channel) | * Filtering (Deviation, Affy detection call, Expression threshold, Genepix Flags, Missing values, 2 channel) | ||
* Normalization (Housekeeping, Log2 transform, Marker based centering, Mean variance, Array based centering, Missing value, Threshold, Quantile) | * Normalization (Housekeeping, Log2 transform, Marker based centering, Mean variance, Array based centering, Missing value, Threshold, Quantile) | ||
| + | * Expression Value Distribution | ||
| + | * Go Terms | ||
| + | * Reverse Engineering (should perhaps be broken into seperate components) | ||
| + | * Scatter Plot | ||
| + | |||
==== Minor Components ==== | ==== Minor Components ==== | ||
| Line 25: | Line 30: | ||
* Marker Annotations ("Retrieve Annotations" button should be disabled until user makes marker selection) | * Marker Annotations ("Retrieve Annotations" button should be disabled until user makes marker selection) | ||
* Color Mosaic ("Pat" and "Abs" buttons appear to do nothing) | * Color Mosaic ("Pat" and "Abs" buttons appear to do nothing) | ||
| − | * Expression Profiles (Performs large computations | + | * Expression Profiles (Performs large computations on event reception and tab selection) |
| + | * caBIO Pathways (Function not tied properly to datasets, operation not clear) | ||
Revision as of 16:18, 2 January 2006
Contents
[hide]geWorkBench Component List and Status
Core Components (bundled with main application)
Major Components
- Analysis (Hierarchical Clustering, SOM, T-Test, Multi T-Test)
- Filtering (Deviation, Affy detection call, Expression threshold, Genepix Flags, Missing values, 2 channel)
- Normalization (Housekeeping, Log2 transform, Marker based centering, Mean variance, Array based centering, Missing value, Threshold, Quantile)
- Expression Value Distribution
- Go Terms
- Reverse Engineering (should perhaps be broken into seperate components)
- Scatter Plot
Minor Components
- Dataset Annotation
- Dataset history
- Experiment info
Additional Components (that pass the Plugin certification checklist)
Components that do not yet pass the Plugin certification checklist
- Associations (Interface needs to be standardized)
- caScript (Not yet complete)
- Synteny parameters (Does not generate proper dataset subnodes)
- Marker Annotations ("Retrieve Annotations" button should be disabled until user makes marker selection)
- Color Mosaic ("Pat" and "Abs" buttons appear to do nothing)
- Expression Profiles (Performs large computations on event reception and tab selection)
- caBIO Pathways (Function not tied properly to datasets, operation not clear)
