Difference between revisions of "Components"
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==== Major Components ==== | ==== Major Components ==== | ||
| + | * Microaray Panel | ||
* Analysis (Hierarchical Clustering, SOM, T-Test, Multi T-Test) | * Analysis (Hierarchical Clustering, SOM, T-Test, Multi T-Test) | ||
* Filtering (Deviation, Affy detection call, Expression threshold, Genepix Flags, Missing values, 2 channel) | * Filtering (Deviation, Affy detection call, Expression threshold, Genepix Flags, Missing values, 2 channel) | ||
Revision as of 16:19, 2 January 2006
Contents
[hide]geWorkBench Component List and Status
Core Components (bundled with main application)
Major Components
- Microaray Panel
- Analysis (Hierarchical Clustering, SOM, T-Test, Multi T-Test)
- Filtering (Deviation, Affy detection call, Expression threshold, Genepix Flags, Missing values, 2 channel)
- Normalization (Housekeeping, Log2 transform, Marker based centering, Mean variance, Array based centering, Missing value, Threshold, Quantile)
- Expression Value Distribution
- Go Terms
- Reverse Engineering (should perhaps be broken into seperate components)
- Scatter Plot
- Tabular microarray
- Sequence retriever
Minor Components
- Dataset Annotation
- Dataset history
- Experiment info
Additional Components (that pass the Plugin certification checklist)
Components that do not yet pass the Plugin certification checklist
- Associations (Interface needs to be standardized)
- caScript (Not yet complete)
- Synteny parameters (Does not generate proper dataset subnodes)
- Synteny main paen (Does not receive proper dataset subnodes, function not clear)
- Marker Annotations ("Retrieve Annotations" button should be disabled until user makes marker selection)
- Color Mosaic ("Pat" and "Abs" buttons appear to do nothing)
- Expression Profiles (Performs large computations on event reception and tab selection)
- caBIO Pathways (Function not tied properly to datasets, operation not clear)
