Difference between revisions of "Screenshots"
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=== Color Mosaic === | === Color Mosaic === | ||
The Color Mosaic component displaying selected arrays, group designation and marker names. | The Color Mosaic component displaying selected arrays, group designation and marker names. | ||
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[[Image:color-mosaic.png]] | [[Image:color-mosaic.png]] | ||
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=== Tabular Microarray Panel === | === Tabular Microarray Panel === | ||
The Tabular Microarray Panel displays the raw values loaded from the data file. | The Tabular Microarray Panel displays the raw values loaded from the data file. | ||
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[[image:tabular.png]] | [[image:tabular.png]] | ||
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=== Expression Profile === | === Expression Profile === | ||
Expression Profile plotting values for selected markers and arrays. | Expression Profile plotting values for selected markers and arrays. | ||
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[[Image:expression-profile.png]] | [[Image:expression-profile.png]] | ||
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=== Hierarchical Clustering === | === Hierarchical Clustering === | ||
A Dendrogram displays the results of the Hierarchical clustering analysis. | A Dendrogram displays the results of the Hierarchical clustering analysis. | ||
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[[Image:dendrogram.png]] | [[Image:dendrogram.png]] | ||
=== SOM Clustering === | === SOM Clustering === | ||
Self Ordered Map clustering results are displayed as series of expression profiles corresponding to discovered groupings. | Self Ordered Map clustering results are displayed as series of expression profiles corresponding to discovered groupings. | ||
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[[Image:somcluster.png]] | [[Image:somcluster.png]] | ||
=== Scatter Plot === | === Scatter Plot === | ||
Compare multiple markers or arrays with the standard Scatter Plot analysis. | Compare multiple markers or arrays with the standard Scatter Plot analysis. | ||
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[[Image:scatterplot.png]] | [[Image:scatterplot.png]] | ||
=== Volcano Plot === | === Volcano Plot === | ||
The Volcano Plot shows the results of a T Test analysis. | The Volcano Plot shows the results of a T Test analysis. | ||
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[[Image:volcanoplot.png]] | [[Image:volcanoplot.png]] | ||
=== caBIO Pathway === | === caBIO Pathway === | ||
Using a connection to caBIO, pathway diagrams can be retrieved and displayed. | Using a connection to caBIO, pathway diagrams can be retrieved and displayed. | ||
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[[Image:cabiopathway.png]] | [[Image:cabiopathway.png]] | ||
=== Reverse Engineering === | === Reverse Engineering === | ||
Use the ARACNE algorithm to reverse engineer the underlying gene regulatory network. | Use the ARACNE algorithm to reverse engineer the underlying gene regulatory network. | ||
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[[Image:reverseengineering.png]] | [[Image:reverseengineering.png]] | ||
=== Cytoscape === | === Cytoscape === | ||
Use the Cytoscape network visualization to view the reverse engineered regulatory network. | Use the Cytoscape network visualization to view the reverse engineered regulatory network. | ||
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[[Image:cytoscape.png]] | [[Image:cytoscape.png]] | ||
=== Pattern Discovery === | === Pattern Discovery === | ||
Use the SPLASH algorithm to discover sparse amino or nucleic acid patterns in a loaded sequence. | Use the SPLASH algorithm to discover sparse amino or nucleic acid patterns in a loaded sequence. | ||
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[[Image:patterndiscovery.png]] | [[Image:patterndiscovery.png]] | ||
=== Promoter Panel === | === Promoter Panel === | ||
The Promoter Panel uses the JASPAR Transcription Factor Binding Profile Database to search for promoter regions in the loaded sequence. | The Promoter Panel uses the JASPAR Transcription Factor Binding Profile Database to search for promoter regions in the loaded sequence. | ||
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[[Image:promoterpanel.png]] | [[Image:promoterpanel.png]] | ||
=== BLAST Queries === | === BLAST Queries === | ||
The BLAST panel runs queries against the Paracel Blast machine running at the Columbia Genome Center. | The BLAST panel runs queries against the Paracel Blast machine running at the Columbia Genome Center. | ||
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[[Image:blastresults.png]] | [[Image:blastresults.png]] | ||
Revision as of 12:59, 2 February 2006
Contents
geWorkbench 3.0 screenshots
Microarray Panel
The Microarray Panel displaying marker values for selected array.
Color Mosaic
The Color Mosaic component displaying selected arrays, group designation and marker names.
Tabular Microarray Panel
The Tabular Microarray Panel displays the raw values loaded from the data file.
Expression Profile
Expression Profile plotting values for selected markers and arrays.
Hierarchical Clustering
A Dendrogram displays the results of the Hierarchical clustering analysis.
SOM Clustering
Self Ordered Map clustering results are displayed as series of expression profiles corresponding to discovered groupings.
Scatter Plot
Compare multiple markers or arrays with the standard Scatter Plot analysis.
Volcano Plot
The Volcano Plot shows the results of a T Test analysis.
caBIO Pathway
Using a connection to caBIO, pathway diagrams can be retrieved and displayed.
Reverse Engineering
Use the ARACNE algorithm to reverse engineer the underlying gene regulatory network.
Cytoscape
Use the Cytoscape network visualization to view the reverse engineered regulatory network.
Pattern Discovery
Use the SPLASH algorithm to discover sparse amino or nucleic acid patterns in a loaded sequence.
Promoter Panel
The Promoter Panel uses the JASPAR Transcription Factor Binding Profile Database to search for promoter regions in the loaded sequence.
BLAST Queries
The BLAST panel runs queries against the Paracel Blast machine running at the Columbia Genome Center.
