Difference between revisions of "SAEC exec sum"
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= SAEC Executive summary of data preparation= | = SAEC Executive summary of data preparation= | ||
"[+]" denotes hidden additional information. Clicking on the "+" shows that information. "-" denotes available mouse-over information. | "[+]" denotes hidden additional information. Clicking on the "+" shows that information. "-" denotes available mouse-over information. | ||
| − | == Data | + | == Data reformatting == |
The original Illumina data that came in four comma separated files where divided up by subject and stored in separate files <span class="toggleblock" title="located on ~/SJS/Genotypes">[<font>-</font>]</span> | The original Illumina data that came in four comma separated files where divided up by subject and stored in separate files <span class="toggleblock" title="located on ~/SJS/Genotypes">[<font>-</font>]</span> | ||
4 subject duplicates in Illumina records were removed <span class="toggleblock" title="removed_Illumina_Subjects">[<font>+</font><font style="display:none;">–</font>]</span> | 4 subject duplicates in Illumina records were removed <span class="toggleblock" title="removed_Illumina_Subjects">[<font>+</font><font style="display:none;">–</font>]</span> | ||
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WG0012277-DNA_A10_2948_A10 and WG0012277-DNA_F04_2948_F04. | WG0012277-DNA_A10_2948_A10 and WG0012277-DNA_F04_2948_F04. | ||
</div> | </div> | ||
| + | == PLINK input data == | ||
| + | |||
| + | == removing SNPs without founder genotype == | ||
| + | |||
| + | == Individuals removed == | ||
| + | |||
| + | == SNPs removed == | ||
Revision as of 15:29, 18 January 2008
Contents
SAEC Executive summary of data preparation
"[+]" denotes hidden additional information. Clicking on the "+" shows that information. "-" denotes available mouse-over information.
Data reformatting
The original Illumina data that came in four comma separated files where divided up by subject and stored in separate files [-] 4 subject duplicates in Illumina records were removed [+–]
WG0012277-DNA_A10_2948_A10 and WG0012277-DNA_F04_2948_F04.
