Difference between revisions of "SAEC exec sum"
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"[+]" denotes hidden additional information. Clicking on the "+" shows that information. "-" denotes available mouse-over information. | "[+]" denotes hidden additional information. Clicking on the "+" shows that information. "-" denotes available mouse-over information. | ||
== Data reformatting == | == Data reformatting == | ||
| − | The original Illumina data that came in four comma separated files where divided up by subject and stored in separate files <span class="toggleblock" title="located on ~/SJS/Genotypes">[<font> | + | The original Illumina data that came in four comma separated files <span class="toggleblock" title="csv_files">[<font>+</font><font style="display:none;">–</font>]</span> where divided up by subject and stored in separate files <span class="toggleblock" title="located on ~/SJS/Genotypes">[<font>*</font><font style="display:none;">*</font>]</span>. |
| − | 4 subject duplicates in Illumina records were removed <span class="toggleblock" title="removed_Illumina_Subjects">[<font>+</font><font style="display:none;">–</font>]</span> | + | 4 subject duplicates in Illumina records were removed based on their call rate<span class="toggleblock" title="removed_Illumina_Subjects">[<font>+</font><font style="display:none;">–</font>]</span>. |
| + | <div id="csv_files" class="hiddenblock"> | ||
| + | PGx40001_12278-DNA.csv | ||
| + | PGx40001_GSK_SJS_B137_28Aug2007_Genotype_Report_12276-DNA.csv | ||
| + | PGx40001_GSK_SJS_B137_28Aug2007_Genotype_Report_12277-DNA.csv | ||
| + | PGx40001_GSK_SJS_B137_28Aug2007_Genotype_Report_12914-DNA.csv | ||
| + | </div> | ||
<div id="removed_Illumina_Subjects" class="hiddenblock"> | <div id="removed_Illumina_Subjects" class="hiddenblock"> | ||
WG0012277-DNA_A10_2948_A10 and WG0012277-DNA_F04_2948_F04. | WG0012277-DNA_A10_2948_A10 and WG0012277-DNA_F04_2948_F04. | ||
</div> | </div> | ||
| + | |||
== PLINK input data == | == PLINK input data == | ||
Revision as of 15:37, 18 January 2008
Contents
SAEC Executive summary of data preparation
"[+]" denotes hidden additional information. Clicking on the "+" shows that information. "-" denotes available mouse-over information.
Data reformatting
The original Illumina data that came in four comma separated files [+–] where divided up by subject and stored in separate files [**]. 4 subject duplicates in Illumina records were removed based on their call rate[+–].
PGx40001_12278-DNA.csv PGx40001_GSK_SJS_B137_28Aug2007_Genotype_Report_12276-DNA.csv PGx40001_GSK_SJS_B137_28Aug2007_Genotype_Report_12277-DNA.csv PGx40001_GSK_SJS_B137_28Aug2007_Genotype_Report_12914-DNA.csv
WG0012277-DNA_A10_2948_A10 and WG0012277-DNA_F04_2948_F04.
