Difference between revisions of "CNKB Data"
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+ | The Cellular Networks Knowledge Base (CNKB) component in geWorkbench 2.0.0 lists the following interactomes for query. However, some data has not yet be released and is password protected, and other data sets are not yet ready for query. | ||
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+ | Data that is currently available for query is shown in light green. | ||
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Revision as of 14:52, 18 June 2010
The Cellular Networks Knowledge Base (CNKB) component in geWorkbench 2.0.0 lists the following interactomes for query. However, some data has not yet be released and is password protected, and other data sets are not yet ready for query.
Data that is currently available for query is shown in light green.
Name | Version | Interaction Types | Availability | Date of release | Number of interactions | Data source |
---|---|---|---|---|---|---|
BCi | 1.0 | (transcriptional) protein-DNA | open | date | number | Califano lab |
BioGRID | 2.0.61 | Interaction Types | open | date | number | Data source |
DIP | 2.4 | Interaction Types | not ready | date | number | Data source |
Geneways | 6.0 | Interaction Types | open | date | number | Rzhetsky lab |
HGi_Phillips | 1.0 | (transcriptional) protein-DNA | open | date | number | Califano lab |
HGi_Sun | 1.0 | (transcriptional) protein-DNA | pending publication | date | number | Califano lab |
HGi_TCGA | 1.0 | (transcriptional) protein-DNA | open | date | number | Califano lab |
HGi_TCGA | 2.0 | (post-translational) protein-protein | pending publication | date | number | Califano lab |
HPRD | 8.0 | Interaction Types | open | date | number | Data source
|
IntAct | 2.0.0 | Interaction Types | not ready | date | number | Data source |
MINT | 2.6 | Interaction Types | not ready | date | number | Data source |
Reactome | 31 | Interaction Types | open | date | number | Data source |
— | — | — | — | — | — | — |
Local abbreviations used:
- BCi - B-Cell interactome, produced by an ARACNe run on B-Cell microarray data from the lab of Dr. Ricardo Dalla-Favera.
- HGi - Human High-Grade Glioma interactome, produced by an ARACNe run on microarray data from several sources:
- Phillips - data published by Phillips et al. ...
- Sun - data published by Sun et al. ...
- TCGA - data obtained from The Cancer Genome Atlas project (NCI).