Components

Revision as of 16:14, 2 January 2006 by Hall (talk | contribs)

geWorkBench Component List and Status

Core Components (bundled with main application)

Major Components

  • Analysis (Hierarchical Clustering, SOM, T-Test, Multi T-Test)
  • Filtering (Deviation, Affy detection call, Expression threshold, Genepix Flags, Missing values, 2 channel)
  • Normalization (Housekeeping, Log2 transform, Marker based centering, Mean variance, Array based centering, Missing value, Threshold, Quantile)

Minor Components

  • Dataset Annotation
  • Dataset history
  • Experiment info

Additional Components (that pass the Plugin certification checklist)

Components that do not yet pass the Plugin certification checklist

  • Associations (Interface needs to be standardized)
  • caScript (Not yet complete)
  • Synteny parameters (Does not generate proper dataset subnodes)
  • Marker Annotations ("Retrieve Annotations" button should be disabled until user makes marker selection)
  • Color Mosaic ("Pat" and "Abs" buttons appear to do nothing)
  • Expression Profiles (Performs large computations without user request)