geWorkbench

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Overview geWorkbench1 (genomics Workbench) is a Java-based open-source platform for integrated genomics. Using a component architecture it allows individually developed plug-ins to be configured into complex bioinformatic applications. At present there are more than 70 available plug-ins supporting the visualization and analysis of gene expression and sequence data. Example use cases include: [show details] loading data from local or remote data sources. visualizing gene expression, molecular interaction networks, protein sequence and protein structure data in a variety of ways. providing access to client- and server-side computational analysis tools such as t-test analysis, hierarchical clustering, self organizing maps, regulatory neworks reconstruction, BLAST searches, pattern/motif discovery, etc. validating computational hypothesis through the integration of gene and pathway annotation information from curated sources as well as through Gene Ontology enrichment analysis. geWorkbench is the Bioinformatics platform of MAGNet, the National Center for the Multi-scale Analysis of Genomic and Cellular Networks (one of the 7 National Centers for Biomedial Computing funded through the NIH Common Fund).
Quick Start Please see the Quick Start guide to geWorkbench to see how to get started using geWorkbench right away.	Current Release The latest production version of geWorkbench (v2.5.1) was released on November 1st, 2013. See changes included in latest release. See history of past releases. Download geWorkbench.
New web-enabled version available geWorkbench-Web provides installation-free access to the geWorkbench plug-ins through a pure browser interface. A beta release is available for testing at: http://geworkbench.c2b2.columbia.edu/geworkbench/.