Difference between revisions of "CNKB Data"
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** '''Phillips''' - data published by Phillips et al. ... | ** '''Phillips''' - data published by Phillips et al. ... | ||
** '''Sun''' - data published by Sun et al. ... | ** '''Sun''' - data published by Sun et al. ... | ||
| − | ** '''TCGA''' - data obtained from The Cancer Genome Atlas (NCI) | + | ** '''TCGA''' - data obtained from The Cancer Genome Atlas project (NCI). |
Revision as of 14:49, 18 June 2010
| Name | Version | Interaction Types | Availability | Date of release | Number of interactions | Data source |
|---|---|---|---|---|---|---|
| BCi | 1.0 | (transcriptional) protein-DNA | open | date | number | Califano lab |
| BioGRID | 2.0.61 | Interaction Types | open | date | number | Data source |
| DIP | 2.4 | Interaction Types | not ready | date | number | Data source |
| Geneways | 6.0 | Interaction Types | open | date | number | Rzhetsky lab |
| HGi_Phillips | 1.0 | (transcriptional) protein-DNA | open | date | number | Califano lab |
| HGi_Sun | 1.0 | (transcriptional) protein-DNA | pending publication | date | number | Califano lab |
| HGi_TCGA | 1.0 | (transcriptional) protein-DNA | open | date | number | Califano lab |
| HGi_TCGA | 2.0 | (post-translational) protein-protein | pending publication | date | number | Califano lab |
| HPRD | 8.0 | Interaction Types | open | date | number | Data source
|
| IntAct | 2.0.0 | Interaction Types | not ready | date | number | Data source |
| MINT | 2.6 | Interaction Types | not ready | date | number | Data source |
| Reactome | 31 | Interaction Types | open | date | number | Data source |
| — | — | — | — | — | — | — |
Local abbreviations used:
- BCi - B-Cell interactome, produced by an ARACNe run on B-Cell microarray data from lab of Dr. Ricardo Dalla-Favera.
- HGi - Human High-Grade Glioma interactome, produced by an ARACNe run on microarray data from several sources:
- Phillips - data published by Phillips et al. ...
- Sun - data published by Sun et al. ...
- TCGA - data obtained from The Cancer Genome Atlas project (NCI).
