Difference between revisions of "IDEA"
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==Notes== | ==Notes== | ||
| + | Networks read in from files into the geWorkbench Project Folders component can be represented as Entrez ID, gene symbol, or probeset id. However, geWorkbench currently converts Entrez ID networks to gene symbols. | ||
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The IDEA analysis, for compatibility with its grid service implementation, first converts each network node, in case it is represented a gene symbol or probeset id, to an Entrez ID. In case multiple nodes map to the same Entrez ID, they are combined. | The IDEA analysis, for compatibility with its grid service implementation, first converts each network node, in case it is represented a gene symbol or probeset id, to an Entrez ID. In case multiple nodes map to the same Entrez ID, they are combined. | ||
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| + | The network can be loaded from the Project, or loaded directly from file in ADJ or SIF format. | ||
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| + | Only genes with a NES > 0 are included in the results table. | ||
Revision as of 12:10, 29 February 2012
IDEA
Notes
Networks read in from files into the geWorkbench Project Folders component can be represented as Entrez ID, gene symbol, or probeset id. However, geWorkbench currently converts Entrez ID networks to gene symbols.
The IDEA analysis, for compatibility with its grid service implementation, first converts each network node, in case it is represented a gene symbol or probeset id, to an Entrez ID. In case multiple nodes map to the same Entrez ID, they are combined.
The network can be loaded from the Project, or loaded directly from file in ADJ or SIF format.
Only genes with a NES > 0 are included in the results table.
