SAEC exec sum
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SAEC Executive summary of data preparation
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Data reformatting
The original Illumina data that came in four comma separated files [+–] where divided up by subject and stored in separate files [**]. 4 subject duplicates in Illumina records were removed based on their call rate[+–].
PGx40001_12278-DNA.csv PGx40001_GSK_SJS_B137_28Aug2007_Genotype_Report_12276-DNA.csv PGx40001_GSK_SJS_B137_28Aug2007_Genotype_Report_12277-DNA.csv PGx40001_GSK_SJS_B137_28Aug2007_Genotype_Report_12914-DNA.csv
WG0012277-DNA_A10_2948_A10 and WG0012277-DNA_F04_2948_F04.
PLINK input data
info on reformatting
removing SNPs without founder genotype
link to file
Individuals removed
removed because (link to results) concordance + ethnic inconsistancies
SNPs removed
SNPs where removed based on more than one criteria, which ones? where are the results?
