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=== Expression Profile === | === Expression Profile === | ||
Revision as of 11:10, 26 June 2006
Contents
geWorkbench 3.0 screenshots
Microarray Panel
The Microarray Panel displaying marker values for selected array.
Color Mosaic
The Color Mosaic component displaying selected arrays, group designation and marker names.
Expression Profile
Expression Profile plotting values for selected markers and arrays.
Hierarchical Clustering
A Dendrogram displays the results of the Hierarchical clustering analysis.
SOM Clustering
Self Ordered Map clustering results are displayed as series of expression profiles corresponding to discovered groupings.
Scatter Plot
Compare multiple markers or arrays with the standard Scatter Plot analysis.
Volcano Plot
The Volcano Plot shows the results of a T Test analysis.
caBIO Pathway
Using a connection to caBIO, pathway diagrams can be retrieved and displayed.
Reverse Engineering
Use the ARACNE algorithm to reverse engineer the underlying gene regulatory network.
Cytoscape
Use the Cytoscape network visualization to view the reverse engineered regulatory network.
Pattern Discovery
Use the SPLASH algorithm to discover sparse amino or nucleic acid patterns in a loaded sequence.
Promoter Panel
The Promoter Panel uses the JASPAR Transcription Factor Binding Profile Database to search for promoter regions in the loaded sequence.
BLAST Queries
The BLAST panel runs queries against the Paracel Blast machine running at the Columbia Genome Center.
