Screenshots

Revision as of 13:00, 2 February 2006 by Hall (talk | contribs)

geWorkbench 3.0 screenshots

Microarray Panel

The Microarray Panel displaying marker values for selected array.


Microarray-panel.png


Color Mosaic

The Color Mosaic component displaying selected arrays, group designation and marker names.


Color-mosaic.png


Tabular Microarray Panel

The Tabular Microarray Panel displays the raw values loaded from the data file.


Tabular.png

Expression Profile

Expression Profile plotting values for selected markers and arrays.


Expression-profile.png

Hierarchical Clustering

A Dendrogram displays the results of the Hierarchical clustering analysis.


Dendrogram.png

SOM Clustering

Self Ordered Map clustering results are displayed as series of expression profiles corresponding to discovered groupings.


Somcluster.png

Scatter Plot

Compare multiple markers or arrays with the standard Scatter Plot analysis.


Scatterplot.png

Volcano Plot

The Volcano Plot shows the results of a T Test analysis.


Volcanoplot.png

caBIO Pathway

Using a connection to caBIO, pathway diagrams can be retrieved and displayed.


Cabiopathway.png

Reverse Engineering

Use the ARACNE algorithm to reverse engineer the underlying gene regulatory network.


Reverseengineering.png

Cytoscape

Use the Cytoscape network visualization to view the reverse engineered regulatory network.


Cytoscape.png

Pattern Discovery

Use the SPLASH algorithm to discover sparse amino or nucleic acid patterns in a loaded sequence.


Patterndiscovery.png

Promoter Panel

The Promoter Panel uses the JASPAR Transcription Factor Binding Profile Database to search for promoter regions in the loaded sequence.


Promoterpanel.png

BLAST Queries

The BLAST panel runs queries against the Paracel Blast machine running at the Columbia Genome Center.


Blastresults.png